JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ENPP2_chr8_119552086_119643839	0/0	a0011	863	1	0	0	1	0	0	copy fasta	ENPP2	chr8	119552086	119643839
ENPP3_chr6_131632302_131752410	1/1	a0001	875	242	63	43	102	12	20	copy fasta	ENPP3	chr6	131632302	131752410
ENPP3_chr6_131632302_131752410	0/0	a0002	875	10	0	5	1	0	4	copy fasta	ENPP3	chr6	131632302	131752410
ENPP3_chr6_131632302_131752410	0/0	a0003	875	7	7	0	0	0	0	copy fasta	ENPP3	chr6	131632302	131752410
ENPP3_chr6_131632302_131752410	0/0	a0004	875	6	6	0	0	0	0	copy fasta	ENPP3	chr6	131632302	131752410
ENPP3_chr6_131632302_131752410	0/0	a0005	875	4	4	0	0	0	0	copy fasta	ENPP3	chr6	131632302	131752410
ENPP3_chr6_131632302_131752410	0/0	a0006	875	3	3	0	0	0	0	copy fasta	ENPP3	chr6	131632302	131752410
ENPP3_chr6_131632302_131752410	0/0	a0007	875	1	0	0	1	0	0	copy fasta	ENPP3	chr6	131632302	131752410
ENPP3_chr6_131632302_131752410	0/0	a0008	875	1	1	0	0	0	0	copy fasta	ENPP3	chr6	131632302	131752410
ENPP3_chr6_131632302_131752410	0/0	a0009	875	1	1	0	0	0	0	copy fasta	ENPP3	chr6	131632302	131752410
ENPP3_chr6_131632302_131752410	0/0	a0010	875	1	1	0	0	0	0	copy fasta	ENPP3	chr6	131632302	131752410
ENPP3_chr6_131632302_131752410	0/0	a0011	875	1	1	0	0	0	0	copy fasta	ENPP3	chr6	131632302	131752410
ENPP3_chr6_131632302_131752410	0/0	a0012	875	1	1	0	0	0	0	copy fasta	ENPP3	chr6	131632302	131752410
ENPP4_chr6_46124989_46151688	1/1	a0001	453	231	64	38	116	3	8	copy fasta	ENPP4	chr6	46124989	46151688
ENPP4_chr6_46124989_46151688	0/0	a0002	453	173	24	36	73	9	31	copy fasta	ENPP4	chr6	46124989	46151688
ENPP4_chr6_46124989_46151688	0/0	a0003	453	20	0	2	18	0	0	copy fasta	ENPP4	chr6	46124989	46151688
ENPP4_chr6_46124989_46151688	0/0	a0004	453	1	0	0	0	0	1	copy fasta	ENPP4	chr6	46124989	46151688
ENPP4_chr6_46124989_46151688	0/0	a0005	453	1	0	0	1	0	0	copy fasta	ENPP4	chr6	46124989	46151688
ENPP5_chr6_46154185_46175980	1/1	a0001	477	234	74	31	116	3	8	copy fasta	ENPP5	chr6	46154185	46175980
ENPP5_chr6_46154185_46175980	0/0	a0002	477	186	21	27	91	13	34	copy fasta	ENPP5	chr6	46154185	46175980
ENPP5_chr6_46154185_46175980	0/0	a0003	477	8	0	0	7	0	1	copy fasta	ENPP5	chr6	46154185	46175980
ENPP5_chr6_46154185_46175980	0/0	a0004	477	7	0	6	0	0	1	copy fasta	ENPP5	chr6	46154185	46175980
ENPP5_chr6_46154185_46175980	0/0	a0005	477	2	0	0	2	0	0	copy fasta	ENPP5	chr6	46154185	46175980
ENPP5_chr6_46154185_46175980	0/0	a0006	477	2	0	2	0	0	0	copy fasta	ENPP5	chr6	46154185	46175980
ENPP5_chr6_46154185_46175980	0/0	a0007	477	1	0	1	0	0	0	copy fasta	ENPP5	chr6	46154185	46175980
ENPP5_chr6_46154185_46175980	0/0	a0008	477	1	0	1	0	0	0	copy fasta	ENPP5	chr6	46154185	46175980
ENPP5_chr6_46154185_46175980	0/0	a0009	477	1	1	0	0	0	0	copy fasta	ENPP5	chr6	46154185	46175980
ENPP5_chr6_46154185_46175980	0/0	a0010	477	1	0	0	1	0	0	copy fasta	ENPP5	chr6	46154185	46175980
ENPP5_chr6_46154185_46175980	0/0	a0011	477	1	0	0	1	0	0	copy fasta	ENPP5	chr6	46154185	46175980
ENPP6_chr4_184083706_184222873	0/1	a0001	440	174	53	34	62	2	22	copy fasta	ENPP6	chr4	184083706	184222873
ENPP6_chr4_184083706_184222873	1/0	a0002	440	142	30	36	46	9	20	copy fasta	ENPP6	chr4	184083706	184222873
ENPP6_chr4_184083706_184222873	0/0	a0003	440	1	0	0	0	1	0	copy fasta	ENPP6	chr4	184083706	184222873
ENPP6_chr4_184083706_184222873	0/0	a0004	440	1	1	0	0	0	0	copy fasta	ENPP6	chr4	184083706	184222873
ENPP6_chr4_184083706_184222873	0/0	a0005	440	1	0	0	1	0	0	copy fasta	ENPP6	chr4	184083706	184222873
ENPP6_chr4_184083706_184222873	0/0	a0006	440	1	0	0	1	0	0	copy fasta	ENPP6	chr4	184083706	184222873
ENPP7_chr17_79725943_79747219	1/0	a0001	458	216	54	28	105	6	22	copy fasta	ENPP7	chr17	79725943	79747219
ENPP7_chr17_79725943_79747219	0/1	a0002	458	175	21	46	74	12	21	copy fasta	ENPP7	chr17	79725943	79747219
ENPP7_chr17_79725943_79747219	0/0	a0003	458	14	12	2	0	0	0	copy fasta	ENPP7	chr17	79725943	79747219
ENPP7_chr17_79725943_79747219	0/0	a0004	458	4	3	1	0	0	0	copy fasta	ENPP7	chr17	79725943	79747219
ENPP7_chr17_79725943_79747219	0/0	a0005	458	3	0	0	0	0	3	copy fasta	ENPP7	chr17	79725943	79747219
ENPP7_chr17_79725943_79747219	0/0	a0006	458	3	0	0	3	0	0	copy fasta	ENPP7	chr17	79725943	79747219
ENPP7_chr17_79725943_79747219	0/0	a0007	458	3	1	2	0	0	0	copy fasta	ENPP7	chr17	79725943	79747219
ENPP7_chr17_79725943_79747219	0/0	a0008	458	3	2	1	0	0	0	copy fasta	ENPP7	chr17	79725943	79747219
ENPP7_chr17_79725943_79747219	0/0	a0009	458	2	2	0	0	0	0	copy fasta	ENPP7	chr17	79725943	79747219
ENPP7_chr17_79725943_79747219	0/0	a0010	458	2	2	0	0	0	0	copy fasta	ENPP7	chr17	79725943	79747219
ENPP7_chr17_79725943_79747219	0/0	a0011	458	1	0	0	1	0	0	copy fasta	ENPP7	chr17	79725943	79747219
ENPP7_chr17_79725943_79747219	0/0	a0012	458	1	0	0	1	0	0	copy fasta	ENPP7	chr17	79725943	79747219
ENPP7_chr17_79725943_79747219	0/0	a0013	458	1	0	0	0	0	1	copy fasta	ENPP7	chr17	79725943	79747219
ENPP7_chr17_79725943_79747219	0/0	a0014	458	1	0	0	0	0	1	copy fasta	ENPP7	chr17	79725943	79747219
ENPP7_chr17_79725943_79747219	0/0	a0015	458	1	1	0	0	0	0	copy fasta	ENPP7	chr17	79725943	79747219