JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ENSA_chr1_150617125_150634612	1/1	a0001	121	420	91	68	193	18	48	copy fasta	ENSA	chr1	150617125	150634612
ENSA_chr1_150617125_150634612	0/0	a0002	121	1	0	0	1	0	0	copy fasta	ENSA	chr1	150617125	150634612
ENSA_chr1_150617125_150634612	0/0	a0003	121	1	1	0	0	0	0	copy fasta	ENSA	chr1	150617125	150634612
ENTHD1_chr22_39738044_39898760	1/1	a0001	607	206	55	41	81	6	21	copy fasta	ENTHD1	chr22	39738044	39898760
ENTHD1_chr22_39738044_39898760	0/0	a0002	607	8	0	7	0	0	1	copy fasta	ENTHD1	chr22	39738044	39898760
ENTHD1_chr22_39738044_39898760	0/0	a0003	607	1	1	0	0	0	0	copy fasta	ENTHD1	chr22	39738044	39898760
ENTHD1_chr22_39738044_39898760	0/0	a0004	607	1	1	0	0	0	0	copy fasta	ENTHD1	chr22	39738044	39898760
ENTHD1_chr22_39738044_39898760	0/0	a0005	607	1	0	0	1	0	0	copy fasta	ENTHD1	chr22	39738044	39898760
ENTHD1_chr22_39738044_39898760	0/0	a0006	607	1	1	0	0	0	0	copy fasta	ENTHD1	chr22	39738044	39898760
ENTPD1_chr10_95751163_95882266	1/1	a0001	510	332	62	76	134	18	40	copy fasta	ENTPD1	chr10	95751163	95882266
ENTPD1_chr10_95751163_95882266	0/0	a0002	510	5	4	0	1	0	0	copy fasta	ENTPD1	chr10	95751163	95882266
ENTPD1_chr10_95751163_95882266	0/0	a0003	510	2	0	0	2	0	0	copy fasta	ENTPD1	chr10	95751163	95882266
ENTPD1_chr10_95751163_95882266	0/0	a0004	510	1	0	0	1	0	0	copy fasta	ENTPD1	chr10	95751163	95882266
ENTPD2_chr9_137043107_137059061	1/1	a0001	495	378	74	84	164	14	40	copy fasta	ENTPD2	chr9	137043107	137059061
ENTPD2_chr9_137043107_137059061	0/0	a0002	495	9	9	0	0	0	0	copy fasta	ENTPD2	chr9	137043107	137059061
ENTPD2_chr9_137043107_137059061	0/0	a0003	495	3	0	0	3	0	0	copy fasta	ENTPD2	chr9	137043107	137059061
ENTPD2_chr9_137043107_137059061	0/0	a0004	495	2	0	0	0	2	0	copy fasta	ENTPD2	chr9	137043107	137059061
ENTPD2_chr9_137043107_137059061	0/0	a0005	182	1	0	0	0	0	1	copy fasta	ENTPD2	chr9	137043107	137059061
ENTPD2_chr9_137043107_137059061	0/0	a0006	495	1	0	0	1	0	0	copy fasta	ENTPD2	chr9	137043107	137059061
ENTPD2_chr9_137043107_137059061	0/0	a0007	495	1	0	0	0	0	1	copy fasta	ENTPD2	chr9	137043107	137059061
ENTPD2_chr9_137043107_137059061	0/0	a0008	495	1	1	0	0	0	0	copy fasta	ENTPD2	chr9	137043107	137059061
ENTPD2_chr9_137043107_137059061	0/0	a0009	495	1	0	0	1	0	0	copy fasta	ENTPD2	chr9	137043107	137059061
ENTPD2_chr9_137043107_137059061	0/0	a0010	495	1	1	0	0	0	0	copy fasta	ENTPD2	chr9	137043107	137059061
ENTPD2_chr9_137043107_137059061	0/0	a0011	495	1	0	0	1	0	0	copy fasta	ENTPD2	chr9	137043107	137059061
ENTPD2_chr9_137043107_137059061	0/0	a0012	495	1	1	0	0	0	0	copy fasta	ENTPD2	chr9	137043107	137059061
ENTPD3_chr3_40382184_40433744	1/0	a0001	529	242	84	32	90	10	25	copy fasta	ENTPD3	chr3	40382184	40433744
ENTPD3_chr3_40382184_40433744	0/1	a0002	529	112	7	21	62	4	17	copy fasta	ENTPD3	chr3	40382184	40433744
ENTPD3_chr3_40382184_40433744	0/0	a0003	529	8	0	0	8	0	0	copy fasta	ENTPD3	chr3	40382184	40433744
ENTPD3_chr3_40382184_40433744	0/0	a0004	529	2	0	0	0	0	2	copy fasta	ENTPD3	chr3	40382184	40433744
ENTPD3_chr3_40382184_40433744	0/0	a0005	529	2	0	0	2	0	0	copy fasta	ENTPD3	chr3	40382184	40433744
ENTPD3_chr3_40382184_40433744	0/0	a0006	529	2	2	0	0	0	0	copy fasta	ENTPD3	chr3	40382184	40433744
ENTPD3_chr3_40382184_40433744	0/0	a0007	494	1	1	0	0	0	0	copy fasta	ENTPD3	chr3	40382184	40433744
ENTPD3_chr3_40382184_40433744	0/0	a0008	529	1	0	0	1	0	0	copy fasta	ENTPD3	chr3	40382184	40433744
ENTPD3_chr3_40382184_40433744	0/0	a0009	529	1	0	1	0	0	0	copy fasta	ENTPD3	chr3	40382184	40433744
ENTPD3_chr3_40382184_40433744	0/0	a0010	529	1	0	0	1	0	0	copy fasta	ENTPD3	chr3	40382184	40433744
ENTPD3_chr3_40382184_40433744	0/0	a0011	529	1	0	0	1	0	0	copy fasta	ENTPD3	chr3	40382184	40433744
ENTPD3_chr3_40382184_40433744	0/0	a0012	529	1	0	0	1	0	0	copy fasta	ENTPD3	chr3	40382184	40433744
ENTPD4_chr8_23424162_23462647	1/1	a0001	616	319	75	52	143	13	34	copy fasta	ENTPD4	chr8	23424162	23462647
ENTPD4_chr8_23424162_23462647	0/0	a0002	616	78	12	19	45	1	1	copy fasta	ENTPD4	chr8	23424162	23462647
ENTPD4_chr8_23424162_23462647	0/0	a0003	616	4	4	0	0	0	0	copy fasta	ENTPD4	chr8	23424162	23462647
ENTPD4_chr8_23424162_23462647	0/0	a0004	616	2	2	0	0	0	0	copy fasta	ENTPD4	chr8	23424162	23462647
ENTPD4_chr8_23424162_23462647	0/0	a0005	616	2	0	0	2	0	0	copy fasta	ENTPD4	chr8	23424162	23462647
ENTPD4_chr8_23424162_23462647	0/0	a0006	616	1	0	0	1	0	0	copy fasta	ENTPD4	chr8	23424162	23462647
ENTPD4_chr8_23424162_23462647	0/0	a0007	616	1	0	0	1	0	0	copy fasta	ENTPD4	chr8	23424162	23462647
ENTPD4_chr8_23424162_23462647	0/0	a0008	616	1	0	0	0	0	1	copy fasta	ENTPD4	chr8	23424162	23462647
ENTPD4_chr8_23424162_23462647	0/0	a0009	616	1	0	1	0	0	0	copy fasta	ENTPD4	chr8	23424162	23462647
ENTPD4_chr8_23424162_23462647	0/0	a0010	616	1	0	0	1	0	0	copy fasta	ENTPD4	chr8	23424162	23462647
ENTPD4_chr8_23424162_23462647	0/0	a0011	616	1	0	0	1	0	0	copy fasta	ENTPD4	chr8	23424162	23462647
ENTPD4_chr8_23424162_23462647	0/0	a0012	616	1	1	0	0	0	0	copy fasta	ENTPD4	chr8	23424162	23462647
ENTPD5_chr14_73958230_74024288	1/1	a0001	428	371	83	68	154	16	48	copy fasta	ENTPD5	chr14	73958230	74024288