JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ENTPD5_chr14_73958230_74024288	0/0	a0002	428	5	5	0	0	0	0	copy fasta	ENTPD5	chr14	73958230	74024288
ENTPD5_chr14_73958230_74024288	0/0	a0003	428	2	2	0	0	0	0	copy fasta	ENTPD5	chr14	73958230	74024288
ENTPD5_chr14_73958230_74024288	0/0	a0004	428	2	2	0	0	0	0	copy fasta	ENTPD5	chr14	73958230	74024288
ENTPD6_chr20_25190712_25233075	0/0	a0001	484	228	73	44	68	11	32	copy fasta	ENTPD6	chr20	25190712	25233075
ENTPD6_chr20_25190712_25233075	0/1	a0002	484	129	7	29	73	3	16	copy fasta	ENTPD6	chr20	25190712	25233075
ENTPD6_chr20_25190712_25233075	0/0	a0003	484	12	11	1	0	0	0	copy fasta	ENTPD6	chr20	25190712	25233075
ENTPD6_chr20_25190712_25233075	0/0	a0004	484	3	3	0	0	0	0	copy fasta	ENTPD6	chr20	25190712	25233075
ENTPD6_chr20_25190712_25233075	0/0	a0005	484	2	0	2	0	0	0	copy fasta	ENTPD6	chr20	25190712	25233075
ENTPD6_chr20_25190712_25233075	0/0	a0006	484	1	1	0	0	0	0	copy fasta	ENTPD6	chr20	25190712	25233075
ENTPD6_chr20_25190712_25233075	0/0	a0007	484	1	0	0	1	0	0	copy fasta	ENTPD6	chr20	25190712	25233075
ENTPD6_chr20_25190712_25233075	0/0	a0008	484	1	0	0	1	0	0	copy fasta	ENTPD6	chr20	25190712	25233075
ENTPD6_chr20_25190712_25233075	0/0	a0009	484	1	0	0	1	0	0	copy fasta	ENTPD6	chr20	25190712	25233075
ENTPD6_chr20_25190712_25233075	0/0	a0010	484	1	1	0	0	0	0	copy fasta	ENTPD6	chr20	25190712	25233075
ENTPD6_chr20_25190712_25233075	1/0	a0011	484	1	0	0	0	0	0	copy fasta	ENTPD6	chr20	25190712	25233075
ENTPD7_chr10_99654509_99716241	1/1	a0001	604	305	63	63	133	12	32	copy fasta	ENTPD7	chr10	99654509	99716241
ENTPD7_chr10_99654509_99716241	0/0	a0002	604	96	16	16	50	4	10	copy fasta	ENTPD7	chr10	99654509	99716241
ENTPD7_chr10_99654509_99716241	0/0	a0003	604	4	4	0	0	0	0	copy fasta	ENTPD7	chr10	99654509	99716241
ENTPD7_chr10_99654509_99716241	0/0	a0004	604	1	1	0	0	0	0	copy fasta	ENTPD7	chr10	99654509	99716241
ENTPD7_chr10_99654509_99716241	0/0	a0005	604	1	0	0	1	0	0	copy fasta	ENTPD7	chr10	99654509	99716241
ENTPD7_chr10_99654509_99716241	0/0	a0006	604	1	0	1	0	0	0	copy fasta	ENTPD7	chr10	99654509	99716241
ENTPD8_chr9_137429364_137446357	0/1	a0001	495	354	81	67	145	16	44	copy fasta	ENTPD8	chr9	137429364	137446357
ENTPD8_chr9_137429364_137446357	1/0	a0002	495	12	2	7	0	0	2	copy fasta	ENTPD8	chr9	137429364	137446357
ENTPD8_chr9_137429364_137446357	0/0	a0003	495	7	0	1	6	0	0	copy fasta	ENTPD8	chr9	137429364	137446357
ENTPD8_chr9_137429364_137446357	0/0	a0004	495	6	6	0	0	0	0	copy fasta	ENTPD8	chr9	137429364	137446357
ENTPD8_chr9_137429364_137446357	0/0	a0005	495	2	0	2	0	0	0	copy fasta	ENTPD8	chr9	137429364	137446357
ENTPD8_chr9_137429364_137446357	0/0	a0006	495	2	2	0	0	0	0	copy fasta	ENTPD8	chr9	137429364	137446357
ENTPD8_chr9_137429364_137446357	0/0	a0007	495	1	1	0	0	0	0	copy fasta	ENTPD8	chr9	137429364	137446357
ENTPD8_chr9_137429364_137446357	0/0	a0008	495	1	0	0	0	0	1	copy fasta	ENTPD8	chr9	137429364	137446357
ENTPD8_chr9_137429364_137446357	0/0	a0009	495	1	1	0	0	0	0	copy fasta	ENTPD8	chr9	137429364	137446357
ENTPD8_chr9_137429364_137446357	0/0	a0010	495	1	1	0	0	0	0	copy fasta	ENTPD8	chr9	137429364	137446357
ENTPD8_chr9_137429364_137446357	0/0	a0011	495	1	0	0	1	0	0	copy fasta	ENTPD8	chr9	137429364	137446357
ENTPD8_chr9_137429364_137446357	0/0	a0012	495	1	0	1	0	0	0	copy fasta	ENTPD8	chr9	137429364	137446357
ENTPD8_chr9_137429364_137446357	0/0	a0013	495	1	1	0	0	0	0	copy fasta	ENTPD8	chr9	137429364	137446357
ENTPD8_chr9_137429364_137446357	0/0	a0014	495	1	0	0	0	0	1	copy fasta	ENTPD8	chr9	137429364	137446357
ENTPD8_chr9_137429364_137446357	0/0	a0015	61	1	1	0	0	0	0	copy fasta	ENTPD8	chr9	137429364	137446357
ENTR1_chr9_136396922_136415614	1/0	a0001	435	333	87	58	137	14	36	copy fasta	ENTR1	chr9	136396922	136415614
ENTR1_chr9_136396922_136415614	0/1	a0002	435	43	2	13	19	4	4	copy fasta	ENTR1	chr9	136396922	136415614
ENTR1_chr9_136396922_136415614	0/0	a0003	28	16	2	4	9	0	1	copy fasta	ENTR1	chr9	136396922	136415614
ENTR1_chr9_136396922_136415614	0/0	a0004	435	4	0	3	0	0	1	copy fasta	ENTR1	chr9	136396922	136415614
ENTR1_chr9_136396922_136415614	0/0	a0005	435	2	0	2	0	0	0	copy fasta	ENTR1	chr9	136396922	136415614
ENTR1_chr9_136396922_136415614	0/0	a0006	435	2	0	0	2	0	0	copy fasta	ENTR1	chr9	136396922	136415614
ENTR1_chr9_136396922_136415614	0/0	a0007	435	2	2	0	0	0	0	copy fasta	ENTR1	chr9	136396922	136415614
ENTR1_chr9_136396922_136415614	0/0	a0008	435	2	1	1	0	0	0	copy fasta	ENTR1	chr9	136396922	136415614
ENTR1_chr9_136396922_136415614	0/0	a0009	435	2	2	0	0	0	0	copy fasta	ENTR1	chr9	136396922	136415614
ENTR1_chr9_136396922_136415614	0/0	a0010	435	1	1	0	0	0	0	copy fasta	ENTR1	chr9	136396922	136415614
ENTR1_chr9_136396922_136415614	0/0	a0011	435	1	0	0	1	0	0	copy fasta	ENTR1	chr9	136396922	136415614
ENTR1_chr9_136396922_136415614	0/0	a0012	435	1	0	1	0	0	0	copy fasta	ENTR1	chr9	136396922	136415614
ENTR1_chr9_136396922_136415614	0/0	a0013	435	1	0	0	1	0	0	copy fasta	ENTR1	chr9	136396922	136415614
ENTR1_chr9_136396922_136415614	0/0	a0014	435	1	0	0	1	0	0	copy fasta	ENTR1	chr9	136396922	136415614
ENTR1_chr9_136396922_136415614	0/0	a0015	435	1	1	0	0	0	0	copy fasta	ENTR1	chr9	136396922	136415614