JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ENTREP1_chr9_69320215_69397456	1/1	a0001	603	330	77	55	141	14	41	copy fasta	ENTREP1	chr9	69320215	69397456
ENTREP1_chr9_69320215_69397456	0/0	a0002	603	6	5	1	0	0	0	copy fasta	ENTREP1	chr9	69320215	69397456
ENTREP1_chr9_69320215_69397456	0/0	a0003	603	2	1	0	0	0	1	copy fasta	ENTREP1	chr9	69320215	69397456
ENTREP1_chr9_69320215_69397456	0/0	a0004	603	1	0	0	1	0	0	copy fasta	ENTREP1	chr9	69320215	69397456
ENTREP1_chr9_69320215_69397456	0/0	a0005	603	1	1	0	0	0	0	copy fasta	ENTREP1	chr9	69320215	69397456
ENTREP1_chr9_69320215_69397456	0/0	a0006	603	1	1	0	0	0	0	copy fasta	ENTREP1	chr9	69320215	69397456
ENTREP1_chr9_69320215_69397456	0/0	a0007	603	1	1	0	0	0	0	copy fasta	ENTREP1	chr9	69320215	69397456
ENTREP2_chr15_29115252_29575979	0/0	a0001	539	43	15	14	10	2	2	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	1/0	a0002	539	40	25	8	4	0	2	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	a0003	539	18	18	0	0	0	0	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	a0004	539	9	0	2	6	0	1	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	a0005	539	6	5	1	0	0	0	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	a0006	539	3	3	0	0	0	0	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	a0007	539	2	2	0	0	0	0	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	a0008	539	2	1	0	0	0	1	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	a0009	539	1	0	1	0	0	0	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	a0010	539	1	1	0	0	0	0	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP3_chr1_155242205_155260483	0/1	a0001	668	333	87	59	129	18	39	copy fasta	ENTREP3	chr1	155242205	155260483
ENTREP3_chr1_155242205_155260483	0/0	a0002	668	19	0	0	18	0	1	copy fasta	ENTREP3	chr1	155242205	155260483
ENTREP3_chr1_155242205_155260483	0/0	a0003	668	17	0	0	17	0	0	copy fasta	ENTREP3	chr1	155242205	155260483
ENTREP3_chr1_155242205_155260483	0/0	a0004	668	7	6	1	0	0	0	copy fasta	ENTREP3	chr1	155242205	155260483
ENTREP3_chr1_155242205_155260483	0/0	a0005	668	4	0	0	4	0	0	copy fasta	ENTREP3	chr1	155242205	155260483
ENTREP3_chr1_155242205_155260483	0/0	a0006	668	3	0	0	3	0	0	copy fasta	ENTREP3	chr1	155242205	155260483
ENTREP3_chr1_155242205_155260483	0/0	a0007	668	3	0	0	3	0	0	copy fasta	ENTREP3	chr1	155242205	155260483
ENTREP3_chr1_155242205_155260483	0/0	a0008	668	2	0	0	1	0	1	copy fasta	ENTREP3	chr1	155242205	155260483
ENTREP3_chr1_155242205_155260483	0/0	a0009	668	2	2	0	0	0	0	copy fasta	ENTREP3	chr1	155242205	155260483
ENTREP3_chr1_155242205_155260483	0/0	a0010	668	1	0	0	1	0	0	copy fasta	ENTREP3	chr1	155242205	155260483
ENTREP3_chr1_155242205_155260483	0/0	a0011	668	1	0	0	1	0	0	copy fasta	ENTREP3	chr1	155242205	155260483
ENTREP3_chr1_155242205_155260483	0/0	a0012	668	1	0	0	1	0	0	copy fasta	ENTREP3	chr1	155242205	155260483
ENTREP3_chr1_155242205_155260483	0/0	a0013	668	1	0	0	0	0	1	copy fasta	ENTREP3	chr1	155242205	155260483
ENTREP3_chr1_155242205_155260483	0/0	a0014	668	1	1	0	0	0	0	copy fasta	ENTREP3	chr1	155242205	155260483
ENY2_chr8_109329347_109350954	1/1	a0001	101	428	94	76	190	18	48	copy fasta	ENY2	chr8	109329347	109350954
EOGT_chr3_68970225_69018684	1/1	a0001	527	424	92	60	210	14	46	copy fasta	EOGT	chr3	68970225	69018684
EOGT_chr3_68970225_69018684	0/0	a0002	527	13	0	13	0	0	0	copy fasta	EOGT	chr3	68970225	69018684
EOGT_chr3_68970225_69018684	0/0	a0003	527	5	4	1	0	0	0	copy fasta	EOGT	chr3	68970225	69018684
EOGT_chr3_68970225_69018684	0/0	a0004	527	1	0	0	1	0	0	copy fasta	EOGT	chr3	68970225	69018684
EOGT_chr3_68970225_69018684	0/0	a0005	527	1	0	0	1	0	0	copy fasta	EOGT	chr3	68970225	69018684
EOLA1_chrX_149536012_149553331	1/1	a0001	158	295	58	53	136	12	34	copy fasta	EOLA1	chrX	149536012	149553331
EOLA1_chrX_149536012_149553331	0/0	a0002	158	17	16	1	0	0	0	copy fasta	EOLA1	chrX	149536012	149553331
EOLA1_chrX_149536012_149553331	0/0	a0003	30	1	0	0	0	1	0	copy fasta	EOLA1	chrX	149536012	149553331
EOLA1_chrX_149536012_149553331	0/0	a0004	158	1	1	0	0	0	0	copy fasta	EOLA1	chrX	149536012	149553331
EOLA1_chrX_149536012_149553331	0/0	a0005	158	1	1	0	0	0	0	copy fasta	EOLA1	chrX	149536012	149553331
EOLA2_chrX_149927197_149943491	1/1	a0001	158	302	58	55	141	13	33	copy fasta	EOLA2	chrX	149927197	149943491
EOLA2_chrX_149927197_149943491	0/0	a0002	158	14	13	1	0	0	0	copy fasta	EOLA2	chrX	149927197	149943491
EOLA2_chrX_149927197_149943491	0/0	a0003	158	11	9	0	1	0	1	copy fasta	EOLA2	chrX	149927197	149943491
EOLA2_chrX_149927197_149943491	0/0	a0004	158	3	1	0	2	0	0	copy fasta	EOLA2	chrX	149927197	149943491
EOLA2_chrX_149927197_149943491	0/0	a0005	158	1	1	0	0	0	0	copy fasta	EOLA2	chrX	149927197	149943491
EOMES_chr3_27710953_27727323	0/0	a0001	707	220	24	32	128	6	30	copy fasta	EOMES	chr3	27710953	27727323
EOMES_chr3_27710953_27727323	1/1	a0002	705	169	61	38	48	8	12	copy fasta	EOMES	chr3	27710953	27727323
EOMES_chr3_27710953_27727323	0/0	a0003	706	7	7	0	0	0	0	copy fasta	EOMES	chr3	27710953	27727323