JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
EOMES_chr3_27710953_27727323	0/0	a0004	705	1	1	0	0	0	0	copy fasta	EOMES	chr3	27710953	27727323
EOMES_chr3_27710953_27727323	0/0	a0005	705	1	0	0	1	0	0	copy fasta	EOMES	chr3	27710953	27727323
EOMES_chr3_27710953_27727323	0/0	a0006	705	1	0	0	1	0	0	copy fasta	EOMES	chr3	27710953	27727323
EOMES_chr3_27710953_27727323	0/0	a0007	705	1	1	0	0	0	0	copy fasta	EOMES	chr3	27710953	27727323
EP300_chr22_41087592_41185077	1/0	a0001	2414	241	82	29	96	10	23	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/1	a0002	2414	47	2	20	6	4	14	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	a0003	2414	3	0	0	3	0	0	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	a0004	2414	1	1	0	0	0	0	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	a0005	2414	1	0	0	1	0	0	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	a0006	2414	1	0	0	0	0	1	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	a0007	2414	1	0	0	1	0	0	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	a0008	2414	1	1	0	0	0	0	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	a0009	2414	1	0	1	0	0	0	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	a0010	2414	1	0	0	1	0	0	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	a0011	2414	1	0	1	0	0	0	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	a0012	2414	1	0	1	0	0	0	copy fasta	EP300	chr22	41087592	41185077
EP400_chr12_131944942_132085460	0/1	a0001	3124	68	8	15	31	3	10	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	1/0	a0002	3123	48	9	10	24	1	3	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	a0003	3124	24	22	2	0	0	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	a0004	3125	18	9	6	1	0	2	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	a0005	3123	11	11	0	0	0	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	a0006	3125	6	4	2	0	0	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	a0007	3125	4	3	0	0	1	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	a0008	3124	3	2	1	0	0	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	a0009	3124	3	0	3	0	0	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	a0010	3123	2	1	1	0	0	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	a0011	3126	2	2	0	0	0	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	a0012	3126	2	2	0	0	0	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	a0013	3123	2	0	0	1	0	1	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	a0014	3124	1	0	0	1	0	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	a0015	3124	1	0	0	0	0	1	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	a0016	3122	1	1	0	0	0	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	a0017	3127	1	1	0	0	0	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	a0018	3127	1	0	0	0	1	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	a0019	3124	1	0	0	0	0	1	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	a0020	3122	1	0	0	1	0	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	a0021	3124	1	0	0	1	0	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	a0022	3124	1	0	0	1	0	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	a0023	3124	1	0	1	0	0	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	a0024	3124	1	0	0	1	0	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	a0025	3124	1	1	0	0	0	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	a0026	3124	1	0	1	0	0	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	a0027	3124	1	1	0	0	0	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	a0028	3124	1	1	0	0	0	0	copy fasta	EP400	chr12	131944942	132085460
EPAS1_chr2_46292407_46391697	1/1	a0001	870	252	46	55	100	16	33	copy fasta	EPAS1	chr2	46292407	46391697
EPAS1_chr2_46292407_46391697	0/0	a0002	870	48	25	0	21	0	2	copy fasta	EPAS1	chr2	46292407	46391697
EPAS1_chr2_46292407_46391697	0/0	a0003	870	21	18	3	0	0	0	copy fasta	EPAS1	chr2	46292407	46391697
EPAS1_chr2_46292407_46391697	0/0	a0004	870	2	2	0	0	0	0	copy fasta	EPAS1	chr2	46292407	46391697
EPAS1_chr2_46292407_46391697	0/0	a0005	870	1	1	0	0	0	0	copy fasta	EPAS1	chr2	46292407	46391697
EPAS1_chr2_46292407_46391697	0/0	a0006	870	1	0	0	0	0	1	copy fasta	EPAS1	chr2	46292407	46391697