JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
EPAS1_chr2_46292407_46391697	0/0	a0007	870	1	0	0	1	0	0	copy fasta	EPAS1	chr2	46292407	46391697
EPB41L1_chr20_36149740_36237799	1/1	a0001	881	233	88	46	70	9	18	copy fasta	EPB41L1	chr20	36149740	36237799
EPB41L1_chr20_36149740_36237799	0/0	a0002	881	1	0	0	1	0	0	copy fasta	EPB41L1	chr20	36149740	36237799
EPB41L1_chr20_36149740_36237799	0/0	a0003	881	1	0	0	0	1	0	copy fasta	EPB41L1	chr20	36149740	36237799
EPB41L1_chr20_36149740_36237799	0/0	a0004	881	1	0	0	1	0	0	copy fasta	EPB41L1	chr20	36149740	36237799
EPB41L2_chr6_130834347_131068245	1/1	a0001	1005	339	79	52	153	10	43	copy fasta	EPB41L2	chr6	130834347	131068245
EPB41L2_chr6_130834347_131068245	0/0	a0002	1005	3	3	0	0	0	0	copy fasta	EPB41L2	chr6	130834347	131068245
EPB41L2_chr6_130834347_131068245	0/0	a0003	1005	3	2	0	1	0	0	copy fasta	EPB41L2	chr6	130834347	131068245
EPB41L2_chr6_130834347_131068245	0/0	a0004	1005	2	2	0	0	0	0	copy fasta	EPB41L2	chr6	130834347	131068245
EPB41L2_chr6_130834347_131068245	0/0	a0005	1005	2	0	1	0	0	1	copy fasta	EPB41L2	chr6	130834347	131068245
EPB41L2_chr6_130834347_131068245	0/0	a0006	1005	1	0	0	1	0	0	copy fasta	EPB41L2	chr6	130834347	131068245
EPB41L2_chr6_130834347_131068245	0/0	a0007	1005	1	0	0	1	0	0	copy fasta	EPB41L2	chr6	130834347	131068245
EPB41L2_chr6_130834347_131068245	0/0	a0008	1005	1	0	0	1	0	0	copy fasta	EPB41L2	chr6	130834347	131068245
EPB41L2_chr6_130834347_131068245	0/0	a0009	1005	1	0	0	1	0	0	copy fasta	EPB41L2	chr6	130834347	131068245
EPB41L2_chr6_130834347_131068245	0/0	a0010	1005	1	0	1	0	0	0	copy fasta	EPB41L2	chr6	130834347	131068245
EPB41L2_chr6_130834347_131068245	0/0	a0011	1005	1	1	0	0	0	0	copy fasta	EPB41L2	chr6	130834347	131068245
EPB41L2_chr6_130834347_131068245	0/0	a0012	1005	1	1	0	0	0	0	copy fasta	EPB41L2	chr6	130834347	131068245
EPB41L3_chr18_5387386_5548997	1/1	a0001	1087	174	67	34	51	3	17	copy fasta	EPB41L3	chr18	5387386	5548997
EPB41L3_chr18_5387386_5548997	0/0	a0002	1087	18	3	6	5	1	3	copy fasta	EPB41L3	chr18	5387386	5548997
EPB41L3_chr18_5387386_5548997	0/0	a0003	1087	9	7	1	0	0	1	copy fasta	EPB41L3	chr18	5387386	5548997
EPB41L3_chr18_5387386_5548997	0/0	a0004	1087	4	3	1	0	0	0	copy fasta	EPB41L3	chr18	5387386	5548997
EPB41L3_chr18_5387386_5548997	0/0	a0005	1087	3	0	0	3	0	0	copy fasta	EPB41L3	chr18	5387386	5548997
EPB41L3_chr18_5387386_5548997	0/0	a0006	1087	3	1	0	0	2	0	copy fasta	EPB41L3	chr18	5387386	5548997
EPB41L3_chr18_5387386_5548997	0/0	a0007	1087	2	2	0	0	0	0	copy fasta	EPB41L3	chr18	5387386	5548997
EPB41L3_chr18_5387386_5548997	0/0	a0008	1087	2	2	0	0	0	0	copy fasta	EPB41L3	chr18	5387386	5548997
EPB41L3_chr18_5387386_5548997	0/0	a0009	1087	1	0	0	0	0	1	copy fasta	EPB41L3	chr18	5387386	5548997
EPB41L3_chr18_5387386_5548997	0/0	a0010	1087	1	1	0	0	0	0	copy fasta	EPB41L3	chr18	5387386	5548997
EPB41L3_chr18_5387386_5548997	0/0	a0011	1087	1	1	0	0	0	0	copy fasta	EPB41L3	chr18	5387386	5548997
EPB41L3_chr18_5387386_5548997	0/0	a0012	1087	1	0	1	0	0	0	copy fasta	EPB41L3	chr18	5387386	5548997
EPB41L3_chr18_5387386_5548997	0/0	a0013	1087	1	0	1	0	0	0	copy fasta	EPB41L3	chr18	5387386	5548997
EPB41L3_chr18_5387386_5548997	0/0	a0014	1087	1	0	0	1	0	0	copy fasta	EPB41L3	chr18	5387386	5548997
EPB41L3_chr18_5387386_5548997	0/0	a0015	1087	1	1	0	0	0	0	copy fasta	EPB41L3	chr18	5387386	5548997
EPB41L4A_chr5_112157619_112424277	0/1	a0001	686	152	36	31	64	6	14	copy fasta	EPB41L4A	chr5	112157619	112424277
EPB41L4A_chr5_112157619_112424277	0/0	a0002	686	23	22	0	0	0	1	copy fasta	EPB41L4A	chr5	112157619	112424277
EPB41L4A_chr5_112157619_112424277	1/0	a0003	686	20	3	10	0	2	4	copy fasta	EPB41L4A	chr5	112157619	112424277
EPB41L4A_chr5_112157619_112424277	0/0	a0004	686	7	7	0	0	0	0	copy fasta	EPB41L4A	chr5	112157619	112424277
EPB41L4A_chr5_112157619_112424277	0/0	a0005	686	7	0	4	0	3	0	copy fasta	EPB41L4A	chr5	112157619	112424277
EPB41L4A_chr5_112157619_112424277	0/0	a0006	686	4	3	0	0	1	0	copy fasta	EPB41L4A	chr5	112157619	112424277
EPB41L4A_chr5_112157619_112424277	0/0	a0007	686	3	3	0	0	0	0	copy fasta	EPB41L4A	chr5	112157619	112424277
EPB41L4A_chr5_112157619_112424277	0/0	a0008	686	3	3	0	0	0	0	copy fasta	EPB41L4A	chr5	112157619	112424277
EPB41L4A_chr5_112157619_112424277	0/0	a0009	686	1	1	0	0	0	0	copy fasta	EPB41L4A	chr5	112157619	112424277
EPB41L4A_chr5_112157619_112424277	0/0	a0010	686	1	0	0	0	0	1	copy fasta	EPB41L4A	chr5	112157619	112424277
EPB41L4A_chr5_112157619_112424277	0/0	a0011	686	1	0	0	0	0	1	copy fasta	EPB41L4A	chr5	112157619	112424277
EPB41L4A_chr5_112157619_112424277	0/0	a0012	686	1	1	0	0	0	0	copy fasta	EPB41L4A	chr5	112157619	112424277
EPB41L4A_chr5_112157619_112424277	0/0	a0013	686	1	0	0	0	0	1	copy fasta	EPB41L4A	chr5	112157619	112424277
EPB41L4A_chr5_112157619_112424277	0/0	a0014	686	1	1	0	0	0	0	copy fasta	EPB41L4A	chr5	112157619	112424277
EPB41L4A_chr5_112157619_112424277	0/0	a0015	686	1	1	0	0	0	0	copy fasta	EPB41L4A	chr5	112157619	112424277
EPB41L4A_chr5_112157619_112424277	0/0	a0016	686	1	1	0	0	0	0	copy fasta	EPB41L4A	chr5	112157619	112424277
EPB41L4A_chr5_112157619_112424277	0/0	a0017	686	1	0	1	0	0	0	copy fasta	EPB41L4A	chr5	112157619	112424277
EPB41L4B_chr9_109166974_109326059	0/1	a0001	900	212	60	46	80	9	16	copy fasta	EPB41L4B	chr9	109166974	109326059