JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
EPB41L4B_chr9_109166974_109326059	1/0	a0002	900	67	17	13	24	0	12	copy fasta	EPB41L4B	chr9	109166974	109326059
EPB41L4B_chr9_109166974_109326059	0/0	a0003	900	30	0	6	23	1	0	copy fasta	EPB41L4B	chr9	109166974	109326059
EPB41L4B_chr9_109166974_109326059	0/0	a0004	900	4	0	0	4	0	0	copy fasta	EPB41L4B	chr9	109166974	109326059
EPB41L4B_chr9_109166974_109326059	0/0	a0005	900	1	0	0	1	0	0	copy fasta	EPB41L4B	chr9	109166974	109326059
EPB41L4B_chr9_109166974_109326059	0/0	a0006	900	1	0	0	1	0	0	copy fasta	EPB41L4B	chr9	109166974	109326059
EPB41L4B_chr9_109166974_109326059	0/0	a0007	900	1	0	0	1	0	0	copy fasta	EPB41L4B	chr9	109166974	109326059
EPB41L4B_chr9_109166974_109326059	0/0	a0008	900	1	0	1	0	0	0	copy fasta	EPB41L4B	chr9	109166974	109326059
EPB41L4B_chr9_109166974_109326059	0/0	a0009	900	1	1	0	0	0	0	copy fasta	EPB41L4B	chr9	109166974	109326059
EPB41L5_chr2_120008077_120184119	1/0	a0001	733	141	45	27	54	2	12	copy fasta	EPB41L5	chr2	120008077	120184119
EPB41L5_chr2_120008077_120184119	0/1	a0002	733	132	30	28	59	2	12	copy fasta	EPB41L5	chr2	120008077	120184119
EPB41L5_chr2_120008077_120184119	0/0	a0003	733	2	2	0	0	0	0	copy fasta	EPB41L5	chr2	120008077	120184119
EPB41L5_chr2_120008077_120184119	0/0	a0004	733	1	1	0	0	0	0	copy fasta	EPB41L5	chr2	120008077	120184119
EPB41L5_chr2_120008077_120184119	0/0	a0005	733	1	0	0	1	0	0	copy fasta	EPB41L5	chr2	120008077	120184119
EPB41L5_chr2_120008077_120184119	0/0	a0006	733	1	0	1	0	0	0	copy fasta	EPB41L5	chr2	120008077	120184119
EPB41_chr1_28909569_29125041	1/1	a0001	864	303	80	61	120	8	32	copy fasta	EPB41	chr1	28909569	29125041
EPB41_chr1_28909569_29125041	0/0	a0002	864	3	0	2	0	0	1	copy fasta	EPB41	chr1	28909569	29125041
EPB41_chr1_28909569_29125041	0/0	a0003	864	1	0	0	0	0	1	copy fasta	EPB41	chr1	28909569	29125041
EPB41_chr1_28909569_29125041	0/0	a0004	864	1	0	0	1	0	0	copy fasta	EPB41	chr1	28909569	29125041
EPB41_chr1_28909569_29125041	0/0	a0005	864	1	1	0	0	0	0	copy fasta	EPB41	chr1	28909569	29125041
EPB41_chr1_28909569_29125041	0/0	a0006	864	1	0	1	0	0	0	copy fasta	EPB41	chr1	28909569	29125041
EPB41_chr1_28909569_29125041	0/0	a0007	864	1	0	0	1	0	0	copy fasta	EPB41	chr1	28909569	29125041
EPB41_chr1_28909569_29125041	0/0	a0008	864	1	1	0	0	0	0	copy fasta	EPB41	chr1	28909569	29125041
EPB42_chr15_43192227_43226018	1/1	a0001	691	279	70	42	135	4	26	copy fasta	EPB42	chr15	43192227	43226018
EPB42_chr15_43192227_43226018	0/0	a0002	691	4	4	0	0	0	0	copy fasta	EPB42	chr15	43192227	43226018
EPB42_chr15_43192227_43226018	0/0	a0003	691	1	0	0	0	0	1	copy fasta	EPB42	chr15	43192227	43226018
EPB42_chr15_43192227_43226018	0/0	a0004	691	1	0	0	0	0	1	copy fasta	EPB42	chr15	43192227	43226018
EPB42_chr15_43192227_43226018	0/0	a0005	691	1	1	0	0	0	0	copy fasta	EPB42	chr15	43192227	43226018
EPB42_chr15_43192227_43226018	0/0	a0006	691	1	0	0	1	0	0	copy fasta	EPB42	chr15	43192227	43226018
EPB42_chr15_43192227_43226018	0/0	a0007	691	1	1	0	0	0	0	copy fasta	EPB42	chr15	43192227	43226018
EPC1_chr10_32262751_32352158	1/1	a0001	813	286	74	60	96	18	36	copy fasta	EPC1	chr10	32262751	32352158
EPC1_chr10_32262751_32352158	0/0	a0002	813	22	20	2	0	0	0	copy fasta	EPC1	chr10	32262751	32352158
EPC1_chr10_32262751_32352158	0/0	a0003	813	6	0	6	0	0	0	copy fasta	EPC1	chr10	32262751	32352158
EPC1_chr10_32262751_32352158	0/0	a0004	813	3	0	0	3	0	0	copy fasta	EPC1	chr10	32262751	32352158
EPC1_chr10_32262751_32352158	0/0	a0005	813	1	0	0	1	0	0	copy fasta	EPC1	chr10	32262751	32352158
EPC2_chr2_148639751_148792569	1/1	a0001	807	304	81	40	145	6	30	copy fasta	EPC2	chr2	148639751	148792569
EPC2_chr2_148639751_148792569	0/0	a0002	807	3	3	0	0	0	0	copy fasta	EPC2	chr2	148639751	148792569
EPC2_chr2_148639751_148792569	0/0	a0003	807	1	0	0	1	0	0	copy fasta	EPC2	chr2	148639751	148792569
EPCAM_chr2_47364311_47392020	0/0	a0001	314	323	86	40	162	10	25	copy fasta	EPCAM	chr2	47364311	47392020
EPCAM_chr2_47364311_47392020	1/1	a0002	314	108	6	29	42	6	23	copy fasta	EPCAM	chr2	47364311	47392020
EPCAM_chr2_47364311_47392020	0/0	a0003	314	11	0	0	11	0	0	copy fasta	EPCAM	chr2	47364311	47392020
EPCAM_chr2_47364311_47392020	0/0	a0004	314	4	3	1	0	0	0	copy fasta	EPCAM	chr2	47364311	47392020
EPCAM_chr2_47364311_47392020	0/0	a0005	314	2	0	0	2	0	0	copy fasta	EPCAM	chr2	47364311	47392020
EPCAM_chr2_47364311_47392020	0/0	a0006	314	1	0	0	1	0	0	copy fasta	EPCAM	chr2	47364311	47392020
EPCAM_chr2_47364311_47392020	0/0	a0007	314	1	1	0	0	0	0	copy fasta	EPCAM	chr2	47364311	47392020
EPDR1_chr7_37915640_37956936	1/1	a0001	224	433	83	83	201	16	48	copy fasta	EPDR1	chr7	37915640	37956936
EPDR1_chr7_37915640_37956936	0/0	a0002	224	12	12	0	0	0	0	copy fasta	EPDR1	chr7	37915640	37956936
EPDR1_chr7_37915640_37956936	0/0	a0003	224	1	0	1	0	0	0	copy fasta	EPDR1	chr7	37915640	37956936
EPDR1_chr7_37915640_37956936	0/0	a0004	224	1	0	0	1	0	0	copy fasta	EPDR1	chr7	37915640	37956936
EPDR1_chr7_37915640_37956936	0/0	a0005	224	1	1	0	0	0	0	copy fasta	EPDR1	chr7	37915640	37956936
EPG5_chr18_45842609_45972329	0/1	a0001	2579	106	14	22	49	5	15	copy fasta	EPG5	chr18	45842609	45972329