JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
EPG5_chr18_45842609_45972329	0/0	a0002	2579	76	14	15	35	3	9	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	a0003	2579	26	4	1	16	0	5	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	a0004	2579	16	12	1	1	1	1	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	1/0	a0005	2579	16	2	7	1	0	5	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	a0006	2579	9	9	0	0	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	a0007	2579	7	1	1	1	1	3	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	a0008	2579	6	0	2	3	0	1	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	a0009	2579	6	6	0	0	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	a0010	2579	4	0	0	4	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	a0011	2579	2	2	0	0	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	a0012	2579	2	0	0	0	2	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	a0013	2579	2	2	0	0	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	a0014	2579	2	2	0	0	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	a0015	2579	2	0	0	2	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	a0016	2579	2	1	1	0	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	a0017	2579	2	0	0	2	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	a0018	2579	2	2	0	0	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	a0019	2579	2	2	0	0	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	a0020	2579	2	2	0	0	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	a0021	2579	1	1	0	0	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	a0022	87	1	0	1	0	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	a0023	2579	1	0	0	0	0	1	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	a0024	2579	1	0	0	1	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	a0025	2579	1	1	0	0	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	a0026	2579	1	0	0	1	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	a0027	2579	1	1	0	0	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	a0028	2579	1	0	1	0	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	a0029	2579	1	0	0	1	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	a0030	2579	1	0	0	1	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	a0031	2579	1	0	1	0	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	a0032	2579	1	0	1	0	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPGN_chr4_74303470_74321789	1/1	a0001	154	364	91	68	157	12	34	copy fasta	EPGN	chr4	74303470	74321789
EPGN_chr4_74303470_74321789	0/0	a0002	154	1	0	0	1	0	0	copy fasta	EPGN	chr4	74303470	74321789
EPGN_chr4_74303470_74321789	0/0	a0003	154	1	1	0	0	0	0	copy fasta	EPGN	chr4	74303470	74321789
EPHA10_chr1_37710976_37770120	1/0	a0001	1008	171	32	39	67	6	26	copy fasta	EPHA10	chr1	37710976	37770120
EPHA10_chr1_37710976_37770120	0/0	a0002	1008	84	17	21	38	3	5	copy fasta	EPHA10	chr1	37710976	37770120
EPHA10_chr1_37710976_37770120	0/0	a0003	1008	41	13	2	24	0	2	copy fasta	EPHA10	chr1	37710976	37770120
EPHA10_chr1_37710976_37770120	0/1	a0004	1008	28	12	6	0	6	3	copy fasta	EPHA10	chr1	37710976	37770120
EPHA10_chr1_37710976_37770120	0/0	a0005	1008	8	0	0	8	0	0	copy fasta	EPHA10	chr1	37710976	37770120
EPHA10_chr1_37710976_37770120	0/0	a0006	1008	8	1	4	0	0	3	copy fasta	EPHA10	chr1	37710976	37770120
EPHA10_chr1_37710976_37770120	0/0	a0007	1008	6	0	0	6	0	0	copy fasta	EPHA10	chr1	37710976	37770120
EPHA10_chr1_37710976_37770120	0/0	a0008	1008	5	5	0	0	0	0	copy fasta	EPHA10	chr1	37710976	37770120
EPHA10_chr1_37710976_37770120	0/0	a0009	1008	3	0	0	3	0	0	copy fasta	EPHA10	chr1	37710976	37770120
EPHA10_chr1_37710976_37770120	0/0	a0010	1008	3	0	2	0	1	0	copy fasta	EPHA10	chr1	37710976	37770120
EPHA10_chr1_37710976_37770120	0/0	a0011	1008	2	0	0	2	0	0	copy fasta	EPHA10	chr1	37710976	37770120
EPHA10_chr1_37710976_37770120	0/0	a0012	1008	2	2	0	0	0	0	copy fasta	EPHA10	chr1	37710976	37770120
EPHA10_chr1_37710976_37770120	0/0	a0013	1008	2	0	0	2	0	0	copy fasta	EPHA10	chr1	37710976	37770120
EPHA10_chr1_37710976_37770120	0/0	a0014	1008	1	0	0	1	0	0	copy fasta	EPHA10	chr1	37710976	37770120
EPHA10_chr1_37710976_37770120	0/0	a0015	1008	1	1	0	0	0	0	copy fasta	EPHA10	chr1	37710976	37770120
EPHA10_chr1_37710976_37770120	0/0	a0016	1008	1	0	0	0	0	1	copy fasta	EPHA10	chr1	37710976	37770120