JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
EPHA10_chr1_37710976_37770120	0/0	a0017	1008	1	0	0	0	0	1	copy fasta	EPHA10	chr1	37710976	37770120
EPHA10_chr1_37710976_37770120	0/0	a0018	1008	1	1	0	0	0	0	copy fasta	EPHA10	chr1	37710976	37770120
EPHA10_chr1_37710976_37770120	0/0	a0019	1008	1	1	0	0	0	0	copy fasta	EPHA10	chr1	37710976	37770120
EPHA10_chr1_37710976_37770120	0/0	a0020	1008	1	0	0	1	0	0	copy fasta	EPHA10	chr1	37710976	37770120
EPHA10_chr1_37710976_37770120	0/0	a0021	1008	1	0	0	1	0	0	copy fasta	EPHA10	chr1	37710976	37770120
EPHA10_chr1_37710976_37770120	0/0	a0022	1008	1	1	0	0	0	0	copy fasta	EPHA10	chr1	37710976	37770120
EPHA10_chr1_37710976_37770120	0/0	a0023	1008	1	1	0	0	0	0	copy fasta	EPHA10	chr1	37710976	37770120
EPHA10_chr1_37710976_37770120	0/0	a0024	1008	1	0	0	1	0	0	copy fasta	EPHA10	chr1	37710976	37770120
EPHA10_chr1_37710976_37770120	0/0	a0025	1008	1	1	0	0	0	0	copy fasta	EPHA10	chr1	37710976	37770120
EPHA10_chr1_37710976_37770120	0/0	a0026	1008	1	0	0	0	0	1	copy fasta	EPHA10	chr1	37710976	37770120
EPHA10_chr1_37710976_37770120	0/0	a0027	1008	1	1	0	0	0	0	copy fasta	EPHA10	chr1	37710976	37770120
EPHA10_chr1_37710976_37770120	0/0	a0028	1008	1	1	0	0	0	0	copy fasta	EPHA10	chr1	37710976	37770120
EPHA10_chr1_37710976_37770120	0/0	a0029	1008	1	0	0	1	0	0	copy fasta	EPHA10	chr1	37710976	37770120
EPHA10_chr1_37710976_37770120	0/0	a0030	1008	1	1	0	0	0	0	copy fasta	EPHA10	chr1	37710976	37770120
EPHA10_chr1_37710976_37770120	0/0	a0031	1008	1	0	0	1	0	0	copy fasta	EPHA10	chr1	37710976	37770120
EPHA10_chr1_37710976_37770120	0/0	a0032	1008	1	1	0	0	0	0	copy fasta	EPHA10	chr1	37710976	37770120
EPHA1_chr7_143386129_143413856	0/1	a0001	976	326	68	66	137	16	38	copy fasta	EPHA1	chr7	143386129	143413856
EPHA1_chr7_143386129_143413856	0/0	a0002	976	58	0	3	52	0	3	copy fasta	EPHA1	chr7	143386129	143413856
EPHA1_chr7_143386129_143413856	0/0	a0003	976	10	8	0	2	0	0	copy fasta	EPHA1	chr7	143386129	143413856
EPHA1_chr7_143386129_143413856	0/0	a0004	976	8	0	2	0	1	5	copy fasta	EPHA1	chr7	143386129	143413856
EPHA1_chr7_143386129_143413856	1/0	a0005	976	4	2	0	0	1	0	copy fasta	EPHA1	chr7	143386129	143413856
EPHA1_chr7_143386129_143413856	0/0	a0006	976	2	2	0	0	0	0	copy fasta	EPHA1	chr7	143386129	143413856
EPHA1_chr7_143386129_143413856	0/0	a0007	976	1	0	0	1	0	0	copy fasta	EPHA1	chr7	143386129	143413856
EPHA1_chr7_143386129_143413856	0/0	a0008	976	1	0	0	1	0	0	copy fasta	EPHA1	chr7	143386129	143413856
EPHA1_chr7_143386129_143413856	0/0	a0009	976	1	0	0	1	0	0	copy fasta	EPHA1	chr7	143386129	143413856
EPHA1_chr7_143386129_143413856	0/0	a0010	976	1	0	0	1	0	0	copy fasta	EPHA1	chr7	143386129	143413856
EPHA1_chr7_143386129_143413856	0/0	a0011	976	1	1	0	0	0	0	copy fasta	EPHA1	chr7	143386129	143413856
EPHA1_chr7_143386129_143413856	0/0	a0012	976	1	0	0	1	0	0	copy fasta	EPHA1	chr7	143386129	143413856
EPHA1_chr7_143386129_143413856	0/0	a0013	976	1	0	1	0	0	0	copy fasta	EPHA1	chr7	143386129	143413856
EPHA1_chr7_143386129_143413856	0/0	a0014	976	1	1	0	0	0	0	copy fasta	EPHA1	chr7	143386129	143413856
EPHA1_chr7_143386129_143413856	0/0	a0015	976	1	0	0	0	0	1	copy fasta	EPHA1	chr7	143386129	143413856
EPHA1_chr7_143386129_143413856	0/0	a0016	976	1	0	1	0	0	0	copy fasta	EPHA1	chr7	143386129	143413856
EPHA1_chr7_143386129_143413856	0/0	a0017	976	1	0	0	0	0	1	copy fasta	EPHA1	chr7	143386129	143413856
EPHA1_chr7_143386129_143413856	0/0	a0018	976	1	0	1	0	0	0	copy fasta	EPHA1	chr7	143386129	143413856
EPHA1_chr7_143386129_143413856	0/0	a0019	976	1	0	0	1	0	0	copy fasta	EPHA1	chr7	143386129	143413856
EPHA1_chr7_143386129_143413856	0/0	a0020	976	1	1	0	0	0	0	copy fasta	EPHA1	chr7	143386129	143413856
EPHA1_chr7_143386129_143413856	0/0	a0021	976	1	0	0	1	0	0	copy fasta	EPHA1	chr7	143386129	143413856
EPHA1_chr7_143386129_143413856	0/0	a0022	976	1	1	0	0	0	0	copy fasta	EPHA1	chr7	143386129	143413856
EPHA1_chr7_143386129_143413856	0/0	a0023	976	1	1	0	0	0	0	copy fasta	EPHA1	chr7	143386129	143413856
EPHA1_chr7_143386129_143413856	0/0	a0024	976	1	1	0	0	0	0	copy fasta	EPHA1	chr7	143386129	143413856
EPHA2_chr1_16119337_16161069	1/1	a0001	976	283	77	60	88	16	40	copy fasta	EPHA2	chr1	16119337	16161069
EPHA2_chr1_16119337_16161069	0/0	a0002	976	8	8	0	0	0	0	copy fasta	EPHA2	chr1	16119337	16161069
EPHA2_chr1_16119337_16161069	0/0	a0003	976	7	0	7	0	0	0	copy fasta	EPHA2	chr1	16119337	16161069
EPHA2_chr1_16119337_16161069	0/0	a0004	976	3	3	0	0	0	0	copy fasta	EPHA2	chr1	16119337	16161069
EPHA2_chr1_16119337_16161069	0/0	a0005	976	2	0	1	1	0	0	copy fasta	EPHA2	chr1	16119337	16161069
EPHA2_chr1_16119337_16161069	0/0	a0006	976	2	2	0	0	0	0	copy fasta	EPHA2	chr1	16119337	16161069
EPHA2_chr1_16119337_16161069	0/0	a0007	976	1	1	0	0	0	0	copy fasta	EPHA2	chr1	16119337	16161069
EPHA2_chr1_16119337_16161069	0/0	a0008	976	1	0	1	0	0	0	copy fasta	EPHA2	chr1	16119337	16161069
EPHA2_chr1_16119337_16161069	0/0	a0009	976	1	0	0	0	0	1	copy fasta	EPHA2	chr1	16119337	16161069
EPHA2_chr1_16119337_16161069	0/0	a0010	976	1	0	0	0	0	1	copy fasta	EPHA2	chr1	16119337	16161069