Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ADRA2C_chr4_3761385_3773526	0/0	a0007	458	1	1	0	0	0	0	copy fasta	ADRA2C	chr4	3761385	3773526
ADRA2C_chr4_3761385_3773526	0/0	a0008	458	1	1	0	0	0	0	copy fasta	ADRA2C	chr4	3761385	3773526
ADRA2C_chr4_3761385_3773526	0/0	a0009	462	1	0	1	0	0	0	copy fasta	ADRA2C	chr4	3761385	3773526
ADRB1_chr10_114038866_114051904	0/1	a0001	477	187	25	43	88	13	17	copy fasta	ADRB1	chr10	114038866	114051904
ADRB1_chr10_114038866_114051904	1/0	a0002	477	120	42	14	44	4	15	copy fasta	ADRB1	chr10	114038866	114051904
ADRB1_chr10_114038866_114051904	0/0	a0003	477	77	18	22	31	1	5	copy fasta	ADRB1	chr10	114038866	114051904
ADRB1_chr10_114038866_114051904	0/0	a0004	477	5	5	0	0	0	0	copy fasta	ADRB1	chr10	114038866	114051904
ADRB1_chr10_114038866_114051904	0/0	a0005	477	2	1	1	0	0	0	copy fasta	ADRB1	chr10	114038866	114051904
ADRB1_chr10_114038866_114051904	0/0	a0006	477	1	1	0	0	0	0	copy fasta	ADRB1	chr10	114038866	114051904
ADRB1_chr10_114038866_114051904	0/0	a0007	477	1	0	0	1	0	0	copy fasta	ADRB1	chr10	114038866	114051904
ADRB1_chr10_114038866_114051904	0/0	a0008	477	1	0	0	0	0	1	copy fasta	ADRB1	chr10	114038866	114051904
ADRB2_chr5_148821611_148833623	0/0	a0001	413	203	49	25	103	5	21	copy fasta	ADRB2	chr5	148821611	148833623
ADRB2_chr5_148821611_148833623	0/0	a0002	413	167	28	26	93	2	18	copy fasta	ADRB2	chr5	148821611	148833623
ADRB2_chr5_148821611_148833623	1/1	a0003	413	75	15	27	15	9	7	copy fasta	ADRB2	chr5	148821611	148833623
ADRB2_chr5_148821611_148833623	0/0	a0004	413	6	6	0	0	0	0	copy fasta	ADRB2	chr5	148821611	148833623
ADRB2_chr5_148821611_148833623	0/0	a0005	413	2	0	0	0	2	0	copy fasta	ADRB2	chr5	148821611	148833623
ADRB2_chr5_148821611_148833623	0/0	a0006	413	1	0	0	1	0	0	copy fasta	ADRB2	chr5	148821611	148833623
ADRB3_chr8_37957990_37971599	1/1	a0001	408	288	63	52	132	6	33	copy fasta	ADRB3	chr8	37957990	37971599
ADRB3_chr8_37957990_37971599	0/0	a0002	408	53	8	6	29	1	9	copy fasta	ADRB3	chr8	37957990	37971599
ADRB3_chr8_37957990_37971599	0/0	a0003	408	8	8	0	0	0	0	copy fasta	ADRB3	chr8	37957990	37971599
ADRB3_chr8_37957990_37971599	0/0	a0004	408	3	0	0	3	0	0	copy fasta	ADRB3	chr8	37957990	37971599
ADRB3_chr8_37957990_37971599	0/0	a0005	408	2	0	0	2	0	0	copy fasta	ADRB3	chr8	37957990	37971599
ADRB3_chr8_37957990_37971599	0/0	a0006	408	1	0	0	1	0	0	copy fasta	ADRB3	chr8	37957990	37971599
ADRB3_chr8_37957990_37971599	0/0	a0007	408	1	1	0	0	0	0	copy fasta	ADRB3	chr8	37957990	37971599
ADRB3_chr8_37957990_37971599	0/0	a0008	408	1	1	0	0	0	0	copy fasta	ADRB3	chr8	37957990	37971599
ADRB3_chr8_37957990_37971599	0/0	a0009	408	1	1	0	0	0	0	copy fasta	ADRB3	chr8	37957990	37971599
ADRB3_chr8_37957990_37971599	0/0	a0010	408	1	0	0	1	0	0	copy fasta	ADRB3	chr8	37957990	37971599
ADRB3_chr8_37957990_37971599	0/0	a0011	408	1	1	0	0	0	0	copy fasta	ADRB3	chr8	37957990	37971599
ADRB3_chr8_37957990_37971599	0/0	a0012	408	1	0	0	0	1	0	copy fasta	ADRB3	chr8	37957990	37971599
ADRB3_chr8_37957990_37971599	0/0	a0013	408	1	1	0	0	0	0	copy fasta	ADRB3	chr8	37957990	37971599
ADRM1_chr20_62297997_62313862	1/1	a0001	407	355	90	70	137	17	39	copy fasta	ADRM1	chr20	62297997	62313862
ADRM1_chr20_62297997_62313862	0/0	a0002	407	6	0	5	1	0	0	copy fasta	ADRM1	chr20	62297997	62313862
ADRM1_chr20_62297997_62313862	0/0	a0003	407	2	0	1	0	1	0	copy fasta	ADRM1	chr20	62297997	62313862
ADRM1_chr20_62297997_62313862	0/0	a0004	407	1	0	0	1	0	0	copy fasta	ADRM1	chr20	62297997	62313862
ADRM1_chr20_62297997_62313862	0/0	a0005	407	1	0	0	1	0	0	copy fasta	ADRM1	chr20	62297997	62313862
ADRM1_chr20_62297997_62313862	0/0	a0006	407	1	1	0	0	0	0	copy fasta	ADRM1	chr20	62297997	62313862
ADRM1_chr20_62297997_62313862	0/0	a0007	407	1	0	0	0	0	1	copy fasta	ADRM1	chr20	62297997	62313862
ADRM1_chr20_62297997_62313862	0/0	a0008	407	1	1	0	0	0	0	copy fasta	ADRM1	chr20	62297997	62313862
ADSL_chr22_40341500_40374367	1/1	a0001	484	296	82	54	122	6	30	copy fasta	ADSL	chr22	40341500	40374367
ADSL_chr22_40341500_40374367	0/0	a0002	484	6	6	0	0	0	0	copy fasta	ADSL	chr22	40341500	40374367
ADSS1_chr14_104719229_104752310	1/1	a0001	457	392	87	76	174	16	37	copy fasta	ADSS1	chr14	104719229	104752310
ADSS1_chr14_104719229_104752310	0/0	a0002	457	4	4	0	0	0	0	copy fasta	ADSS1	chr14	104719229	104752310
ADSS1_chr14_104719229_104752310	0/0	a0003	457	2	2	0	0	0	0	copy fasta	ADSS1	chr14	104719229	104752310
ADSS1_chr14_104719229_104752310	0/0	a0004	457	1	0	0	1	0	0	copy fasta	ADSS1	chr14	104719229	104752310
ADSS1_chr14_104719229_104752310	0/0	a0005	457	1	0	0	0	0	1	copy fasta	ADSS1	chr14	104719229	104752310
ADSS1_chr14_104719229_104752310	0/0	a0006	457	1	0	0	1	0	0	copy fasta	ADSS1	chr14	104719229	104752310
ADSS1_chr14_104719229_104752310	0/0	a0007	457	1	1	0	0	0	0	copy fasta	ADSS1	chr14	104719229	104752310
ADSS2_chr1_244403494_244456909	1/1	a0001	456	406	94	77	182	12	39	copy fasta	ADSS2	chr1	244403494	244456909
ADSS2_chr1_244403494_244456909	0/0	a0002	456	2	0	1	0	0	1	copy fasta	ADSS2	chr1	244403494	244456909
ADTRP_chr6_11708523_11783803	1/1	a0001	230	322	74	76	115	11	44	copy fasta	ADTRP	chr6	11708523	11783803