JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
EPHA2_chr1_16119337_16161069	0/0	a0011	976	1	0	1	0	0	0	copy fasta	EPHA2	chr1	16119337	16161069
EPHA2_chr1_16119337_16161069	0/0	a0012	976	1	0	0	1	0	0	copy fasta	EPHA2	chr1	16119337	16161069
EPHA2_chr1_16119337_16161069	0/0	a0013	976	1	1	0	0	0	0	copy fasta	EPHA2	chr1	16119337	16161069
EPHA3_chr3_89102621_89487134	1/1	a0001	983	92	19	20	37	3	11	copy fasta	EPHA3	chr3	89102621	89487134
EPHA3_chr3_89102621_89487134	0/0	a0002	983	86	36	27	15	3	5	copy fasta	EPHA3	chr3	89102621	89487134
EPHA3_chr3_89102621_89487134	0/0	a0003	983	14	0	0	10	2	2	copy fasta	EPHA3	chr3	89102621	89487134
EPHA3_chr3_89102621_89487134	0/0	a0004	983	4	3	1	0	0	0	copy fasta	EPHA3	chr3	89102621	89487134
EPHA3_chr3_89102621_89487134	0/0	a0005	983	3	3	0	0	0	0	copy fasta	EPHA3	chr3	89102621	89487134
EPHA3_chr3_89102621_89487134	0/0	a0006	983	1	1	0	0	0	0	copy fasta	EPHA3	chr3	89102621	89487134
EPHA4_chr2_221413027_221577304	1/1	a0001	986	293	77	54	118	6	36	copy fasta	EPHA4	chr2	221413027	221577304
EPHA4_chr2_221413027_221577304	0/0	a0002	986	1	1	0	0	0	0	copy fasta	EPHA4	chr2	221413027	221577304
EPHA5_chr4_65314567_65675489	1/1	a0001	1016	223	77	40	72	11	21	copy fasta	EPHA5	chr4	65314567	65675489
EPHA5_chr4_65314567_65675489	0/0	a0002	1016	4	0	0	0	1	3	copy fasta	EPHA5	chr4	65314567	65675489
EPHA5_chr4_65314567_65675489	0/0	a0003	1016	4	1	1	0	0	2	copy fasta	EPHA5	chr4	65314567	65675489
EPHA5_chr4_65314567_65675489	0/0	a0004	1016	1	1	0	0	0	0	copy fasta	EPHA5	chr4	65314567	65675489
EPHA5_chr4_65314567_65675489	0/0	a0005	1016	1	0	1	0	0	0	copy fasta	EPHA5	chr4	65314567	65675489
EPHA5_chr4_65314567_65675489	0/0	a0006	1016	1	1	0	0	0	0	copy fasta	EPHA5	chr4	65314567	65675489
EPHA6_chr3_96809594_97766532	0/0	a0001	1130	81	54	21	6	0	0	copy fasta	EPHA6	chr3	96809594	97766532
EPHA6_chr3_96809594_97766532	0/0	a0002	1130	1	0	1	0	0	0	copy fasta	EPHA6	chr3	96809594	97766532
EPHA7_chr6_93235020_93424559	1/1	a0001	998	260	82	53	80	13	30	copy fasta	EPHA7	chr6	93235020	93424559
EPHA7_chr6_93235020_93424559	0/0	a0002	998	20	0	5	12	1	2	copy fasta	EPHA7	chr6	93235020	93424559
EPHA8_chr1_22558489_22608595	0/0	a0000	0	8	0	2	6	0	0	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	1/0	a0001	1005	265	67	62	89	12	34	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/1	a0002	1005	44	12	10	15	1	5	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	a0003	1005	6	5	1	0	0	0	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	a0004	1005	4	4	0	0	0	0	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	a0005	1005	2	2	0	0	0	0	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	a0006	1005	1	1	0	0	0	0	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	a0007	1005	1	1	0	0	0	0	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	a0008	1005	1	1	0	0	0	0	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	a0009	1005	1	0	0	1	0	0	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	a0010	466	1	1	0	0	0	0	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	a0011	1005	1	1	0	0	0	0	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	a0012	1005	1	0	0	0	1	0	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	a0013	1005	1	0	1	0	0	0	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	a0014	1005	1	0	0	1	0	0	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	a0015	1005	1	0	1	0	0	0	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	a0016	1005	1	1	0	0	0	0	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	a0017	1005	1	0	0	0	0	1	copy fasta	EPHA8	chr1	22558489	22608595
EPHA8_chr1_22558489_22608595	0/0	a0018	1005	1	0	1	0	0	0	copy fasta	EPHA8	chr1	22558489	22608595
EPHB1_chr3_134790260_135265467	1/1	a0001	984	132	67	30	6	4	23	copy fasta	EPHB1	chr3	134790260	135265467
EPHB1_chr3_134790260_135265467	0/0	a0002	984	1	0	0	0	0	1	copy fasta	EPHB1	chr3	134790260	135265467
EPHB1_chr3_134790260_135265467	0/0	a0003	984	1	1	0	0	0	0	copy fasta	EPHB1	chr3	134790260	135265467
EPHB2_chr1_22705839_22926500	1/1	a0001	986	244	82	52	72	10	26	copy fasta	EPHB2	chr1	22705839	22926500
EPHB2_chr1_22705839_22926500	0/0	a0002	986	2	2	0	0	0	0	copy fasta	EPHB2	chr1	22705839	22926500
EPHB2_chr1_22705839_22926500	0/0	a0003	986	1	1	0	0	0	0	copy fasta	EPHB2	chr1	22705839	22926500
EPHB2_chr1_22705839_22926500	0/0	a0004	986	1	1	0	0	0	0	copy fasta	EPHB2	chr1	22705839	22926500
EPHB3_chr3_184556785_184587408	1/0	a0001	998	340	96	61	130	14	38	copy fasta	EPHB3	chr3	184556785	184587408
EPHB3_chr3_184556785_184587408	0/0	a0002	998	10	0	2	8	0	0	copy fasta	EPHB3	chr3	184556785	184587408
EPHB3_chr3_184556785_184587408	0/1	a0003	998	2	0	1	0	0	0	copy fasta	EPHB3	chr3	184556785	184587408