JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
EPHB3_chr3_184556785_184587408	0/0	a0004	998	1	0	1	0	0	0	copy fasta	EPHB3	chr3	184556785	184587408
EPHB3_chr3_184556785_184587408	0/0	a0005	998	1	0	0	1	0	0	copy fasta	EPHB3	chr3	184556785	184587408
EPHB3_chr3_184556785_184587408	0/0	a0006	998	1	0	1	0	0	0	copy fasta	EPHB3	chr3	184556785	184587408
EPHB3_chr3_184556785_184587408	0/0	a0007	998	1	0	0	1	0	0	copy fasta	EPHB3	chr3	184556785	184587408
EPHB3_chr3_184556785_184587408	0/0	a0008	998	1	0	0	1	0	0	copy fasta	EPHB3	chr3	184556785	184587408
EPHB3_chr3_184556785_184587408	0/0	a0009	998	1	0	0	1	0	0	copy fasta	EPHB3	chr3	184556785	184587408
EPHB4_chr7_100797565_100832523	1/1	a0001	987	350	84	60	146	12	46	copy fasta	EPHB4	chr7	100797565	100832523
EPHB4_chr7_100797565_100832523	0/0	a0002	987	4	0	0	4	0	0	copy fasta	EPHB4	chr7	100797565	100832523
EPHB4_chr7_100797565_100832523	0/0	a0003	987	3	3	0	0	0	0	copy fasta	EPHB4	chr7	100797565	100832523
EPHB4_chr7_100797565_100832523	0/0	a0004	987	2	0	0	2	0	0	copy fasta	EPHB4	chr7	100797565	100832523
EPHB4_chr7_100797565_100832523	0/0	a0005	987	1	1	0	0	0	0	copy fasta	EPHB4	chr7	100797565	100832523
EPHB4_chr7_100797565_100832523	0/0	a0006	987	1	1	0	0	0	0	copy fasta	EPHB4	chr7	100797565	100832523
EPHB4_chr7_100797565_100832523	0/0	a0007	987	1	0	0	1	0	0	copy fasta	EPHB4	chr7	100797565	100832523
EPHB4_chr7_100797565_100832523	0/0	a0008	987	1	1	0	0	0	0	copy fasta	EPHB4	chr7	100797565	100832523
EPHB4_chr7_100797565_100832523	0/0	a0009	987	1	0	0	1	0	0	copy fasta	EPHB4	chr7	100797565	100832523
EPHB6_chr7_142850076_142876093	0/1	a0001	1021	218	33	56	82	12	34	copy fasta	EPHB6	chr7	142850076	142876093
EPHB6_chr7_142850076_142876093	0/0	a0002	1023	40	26	7	6	1	0	copy fasta	EPHB6	chr7	142850076	142876093
EPHB6_chr7_142850076_142876093	0/0	a0003	1022	21	14	3	2	0	2	copy fasta	EPHB6	chr7	142850076	142876093
EPHB6_chr7_142850076_142876093	0/0	a0004	1022	18	16	1	1	0	0	copy fasta	EPHB6	chr7	142850076	142876093
EPHB6_chr7_142850076_142876093	0/0	a0005	1021	3	0	2	0	0	1	copy fasta	EPHB6	chr7	142850076	142876093
EPHB6_chr7_142850076_142876093	0/0	a0006	1021	2	2	0	0	0	0	copy fasta	EPHB6	chr7	142850076	142876093
EPHB6_chr7_142850076_142876093	0/0	a0007	1021	2	0	0	2	0	0	copy fasta	EPHB6	chr7	142850076	142876093
EPHB6_chr7_142850076_142876093	0/0	a0008	1021	1	0	0	0	1	0	copy fasta	EPHB6	chr7	142850076	142876093
EPHB6_chr7_142850076_142876093	0/0	a0009	1021	1	0	1	0	0	0	copy fasta	EPHB6	chr7	142850076	142876093
EPHB6_chr7_142850076_142876093	0/0	a0010	1021	1	1	0	0	0	0	copy fasta	EPHB6	chr7	142850076	142876093
EPHB6_chr7_142850076_142876093	0/0	a0011	1021	1	0	0	1	0	0	copy fasta	EPHB6	chr7	142850076	142876093
EPHB6_chr7_142850076_142876093	0/0	a0012	687	1	1	0	0	0	0	copy fasta	EPHB6	chr7	142850076	142876093
EPHB6_chr7_142850076_142876093	0/0	a0013	1023	1	0	0	0	0	1	copy fasta	EPHB6	chr7	142850076	142876093
EPHB6_chr7_142850076_142876093	0/0	a0014	1023	1	1	0	0	0	0	copy fasta	EPHB6	chr7	142850076	142876093
EPHX1_chr1_225805124_225850563	1/1	a0001	455	207	48	47	79	8	23	copy fasta	EPHX1	chr1	225805124	225850563
EPHX1_chr1_225805124_225850563	0/0	a0002	455	124	9	16	81	4	14	copy fasta	EPHX1	chr1	225805124	225850563
EPHX1_chr1_225805124_225850563	0/0	a0003	455	60	28	10	13	2	7	copy fasta	EPHX1	chr1	225805124	225850563
EPHX1_chr1_225805124_225850563	0/0	a0004	455	10	2	2	5	0	1	copy fasta	EPHX1	chr1	225805124	225850563
EPHX1_chr1_225805124_225850563	0/0	a0005	455	4	4	0	0	0	0	copy fasta	EPHX1	chr1	225805124	225850563
EPHX1_chr1_225805124_225850563	0/0	a0006	455	3	3	0	0	0	0	copy fasta	EPHX1	chr1	225805124	225850563
EPHX1_chr1_225805124_225850563	0/0	a0007	455	3	0	0	3	0	0	copy fasta	EPHX1	chr1	225805124	225850563
EPHX1_chr1_225805124_225850563	0/0	a0008	455	2	0	0	2	0	0	copy fasta	EPHX1	chr1	225805124	225850563
EPHX1_chr1_225805124_225850563	0/0	a0009	455	2	0	0	2	0	0	copy fasta	EPHX1	chr1	225805124	225850563
EPHX1_chr1_225805124_225850563	0/0	a0010	455	1	0	0	1	0	0	copy fasta	EPHX1	chr1	225805124	225850563
EPHX1_chr1_225805124_225850563	0/0	a0011	455	1	1	0	0	0	0	copy fasta	EPHX1	chr1	225805124	225850563
EPHX1_chr1_225805124_225850563	0/0	a0012	455	1	1	0	0	0	0	copy fasta	EPHX1	chr1	225805124	225850563
EPHX1_chr1_225805124_225850563	0/0	a0013	455	1	0	1	0	0	0	copy fasta	EPHX1	chr1	225805124	225850563
EPHX1_chr1_225805124_225850563	0/0	a0014	455	1	0	0	0	0	1	copy fasta	EPHX1	chr1	225805124	225850563
EPHX1_chr1_225805124_225850563	0/0	a0015	455	1	0	0	1	0	0	copy fasta	EPHX1	chr1	225805124	225850563
EPHX1_chr1_225805124_225850563	0/0	a0016	455	1	0	0	1	0	0	copy fasta	EPHX1	chr1	225805124	225850563
EPHX2_chr8_27486143_27550564	1/1	a0001	555	244	56	36	117	6	27	copy fasta	EPHX2	chr8	27486143	27550564
EPHX2_chr8_27486143_27550564	0/0	a0002	555	62	5	5	43	3	6	copy fasta	EPHX2	chr8	27486143	27550564
EPHX2_chr8_27486143_27550564	0/0	a0003	555	26	17	5	0	0	4	copy fasta	EPHX2	chr8	27486143	27550564
EPHX2_chr8_27486143_27550564	0/0	a0004	555	10	8	2	0	0	0	copy fasta	EPHX2	chr8	27486143	27550564
EPHX2_chr8_27486143_27550564	0/0	a0005	555	7	0	0	7	0	0	copy fasta	EPHX2	chr8	27486143	27550564