JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
EPN3_chr17_50527735_50548750	0/0	a0012	632	1	0	1	0	0	0	copy fasta	EPN3	chr17	50527735	50548750
EPN3_chr17_50527735_50548750	0/0	a0013	638	1	1	0	0	0	0	copy fasta	EPN3	chr17	50527735	50548750
EPN3_chr17_50527735_50548750	0/0	a0014	632	1	0	0	1	0	0	copy fasta	EPN3	chr17	50527735	50548750
EPN3_chr17_50527735_50548750	0/0	a0015	632	1	0	0	0	0	1	copy fasta	EPN3	chr17	50527735	50548750
EPN3_chr17_50527735_50548750	0/0	a0016	632	1	0	0	1	0	0	copy fasta	EPN3	chr17	50527735	50548750
EPOP_chr17_38666703_38679957	0/1	a0001	379	177	18	49	84	3	22	copy fasta	EPOP	chr17	38666703	38679957
EPOP_chr17_38666703_38679957	0/0	a0002	379	80	27	11	36	0	6	copy fasta	EPOP	chr17	38666703	38679957
EPOP_chr17_38666703_38679957	0/0	a0003	379	65	49	4	10	1	1	copy fasta	EPOP	chr17	38666703	38679957
EPOP_chr17_38666703_38679957	0/0	a0004	379	22	2	1	12	2	5	copy fasta	EPOP	chr17	38666703	38679957
EPOP_chr17_38666703_38679957	0/0	a0005	379	1	0	0	1	0	0	copy fasta	EPOP	chr17	38666703	38679957
EPOP_chr17_38666703_38679957	0/0	a0006	379	1	0	0	0	0	1	copy fasta	EPOP	chr17	38666703	38679957
EPOP_chr17_38666703_38679957	0/0	a0007	379	1	0	0	1	0	0	copy fasta	EPOP	chr17	38666703	38679957
EPOP_chr17_38666703_38679957	0/0	a0008	379	1	0	0	1	0	0	copy fasta	EPOP	chr17	38666703	38679957
EPOP_chr17_38666703_38679957	0/0	a0009	379	1	0	0	0	0	1	copy fasta	EPOP	chr17	38666703	38679957
EPOP_chr17_38666703_38679957	0/0	a0010	379	1	0	0	1	0	0	copy fasta	EPOP	chr17	38666703	38679957
EPOP_chr17_38666703_38679957	0/0	a0011	379	1	0	1	0	0	0	copy fasta	EPOP	chr17	38666703	38679957
EPOR_chr19_11372207_11389314	1/1	a0001	508	376	74	70	168	16	46	copy fasta	EPOR	chr19	11372207	11389314
EPOR_chr19_11372207_11389314	0/0	a0002	508	21	19	2	0	0	0	copy fasta	EPOR	chr19	11372207	11389314
EPOR_chr19_11372207_11389314	0/0	a0003	508	2	0	2	0	0	0	copy fasta	EPOR	chr19	11372207	11389314
EPOR_chr19_11372207_11389314	0/0	a0004	508	2	2	0	0	0	0	copy fasta	EPOR	chr19	11372207	11389314
EPOR_chr19_11372207_11389314	0/0	a0005	508	1	0	1	0	0	0	copy fasta	EPOR	chr19	11372207	11389314
EPOR_chr19_11372207_11389314	0/0	a0006	508	1	0	1	0	0	0	copy fasta	EPOR	chr19	11372207	11389314
EPOR_chr19_11372207_11389314	0/0	a0007	508	1	1	0	0	0	0	copy fasta	EPOR	chr19	11372207	11389314
EPO_chr7_100715468_100728700	1/1	a0001	193	377	88	62	161	18	46	copy fasta	EPO	chr7	100715468	100728700
EPO_chr7_100715468_100728700	0/0	a0002	193	1	1	0	0	0	0	copy fasta	EPO	chr7	100715468	100728700
EPO_chr7_100715468_100728700	0/0	a0003	193	1	0	0	1	0	0	copy fasta	EPO	chr7	100715468	100728700
EPO_chr7_100715468_100728700	0/0	a0004	193	1	1	0	0	0	0	copy fasta	EPO	chr7	100715468	100728700
EPPIN_chr20_45535626_45552401	1/1	a0001	133	388	81	71	176	14	44	copy fasta	EPPIN	chr20	45535626	45552401
EPPIN_chr20_45535626_45552401	0/0	a0002	133	45	15	11	19	0	0	copy fasta	EPPIN	chr20	45535626	45552401
EPPIN_chr20_45535626_45552401	0/0	a0003	133	5	0	0	5	0	0	copy fasta	EPPIN	chr20	45535626	45552401
EPPK1_chr8_143852324_143883467	0/0	a0001	5086	34	2	5	25	2	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0002	5086	9	4	0	4	0	1	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0003	6148	7	0	5	0	2	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0004	4552	4	0	0	4	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0005	4552	4	1	3	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0006	4021	4	0	2	2	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0007	4557	4	0	0	4	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0008	5092	4	0	4	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0009	5092	3	0	3	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0010	4547	3	3	0	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0011	5609	3	3	0	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0012	5086	3	0	3	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0013	4549	3	0	0	3	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0014	4558	3	0	2	0	0	1	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0015	5074	3	3	0	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0016	5086	3	0	0	3	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0017	5084	3	0	0	3	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0018	5084	3	0	0	3	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0019	5084	3	3	0	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0020	4549	3	0	0	3	0	0	copy fasta	EPPK1	chr8	143852324	143883467