JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
EPPK1_chr8_143852324_143883467	0/0	a0171	3102	1	0	0	1	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0172	5088	1	0	1	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0173	4078	1	0	0	1	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0174	5086	1	0	1	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0175	5084	1	0	1	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0176	5086	1	0	0	1	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0177	5086	1	0	0	1	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0178	5086	1	0	0	0	0	1	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0179	5086	1	0	0	1	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0180	5086	1	0	0	1	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0181	5086	1	0	0	1	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0182	5086	1	0	0	1	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0183	5086	1	0	0	1	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0184	5086	1	0	0	1	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0185	5086	1	0	0	1	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0186	5086	1	0	0	1	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0187	5087	1	0	0	1	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0188	5086	1	0	0	1	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0189	5086	1	0	0	1	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0190	4553	1	0	1	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0191	6154	1	0	1	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0192	6151	1	0	0	1	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0193	5086	1	0	0	1	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0194	6680	1	1	0	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0195	4555	1	0	0	1	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0196	2954	1	0	0	0	0	1	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0197	5086	1	0	0	1	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0198	4772	1	0	0	0	0	1	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0199	4555	1	0	0	1	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0200	3176	1	0	0	1	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0201	5086	1	0	0	1	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0202	5085	1	0	0	1	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0203	5083	1	0	0	1	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0204	4024	1	0	0	1	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0205	5086	1	0	0	1	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0206	5092	1	0	0	0	1	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0207	5094	1	0	0	1	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0208	5092	1	0	0	0	0	1	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0209	9329	1	1	0	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0210	2158	1	0	1	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0211	4023	1	0	0	1	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0212	5086	1	0	0	1	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0213	5086	1	0	0	1	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0214	5086	1	0	0	0	0	1	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0215	4557	1	0	0	0	1	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0216	4024	1	0	0	1	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0217	5626	1	0	0	1	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0218	5092	1	0	0	1	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0219	5089	1	0	0	1	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0220	5086	1	1	0	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467