JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
EPPK1_chr8_143852324_143883467	0/0	a0271	5086	1	0	0	0	1	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0272	3181	1	0	0	0	0	1	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0273	5626	1	0	1	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0274	4558	1	0	1	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0275	4413	1	0	1	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0276	5092	1	0	1	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0277	5093	1	0	1	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0278	7230	1	0	1	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0279	5092	1	0	0	0	0	1	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0280	5092	1	0	0	0	1	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0281	4557	1	0	0	1	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0282	5093	1	0	0	0	0	1	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0283	5093	1	0	1	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0284	5092	1	0	0	1	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0285	4024	1	0	0	1	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0286	5626	1	0	0	1	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0287	4024	1	0	0	1	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0288	5092	1	0	0	1	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0289	4023	1	0	0	1	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0290	4557	1	0	0	1	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0291	4554	1	0	0	1	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0292	4023	1	0	0	1	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0293	5092	1	0	0	0	0	1	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0294	4025	1	0	1	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0295	4024	1	0	1	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0296	4024	1	0	1	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0297	5086	1	0	0	0	1	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0298	5086	1	0	0	0	0	1	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0299	5086	1	0	1	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0300	4021	1	0	0	0	1	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0301	4552	1	0	1	0	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0302	5089	1	0	0	1	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0303	5092	1	0	0	1	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0304	5092	1	0	0	1	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0305	5089	1	0	0	1	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPPK1_chr8_143852324_143883467	0/0	a0306	5626	1	0	0	1	0	0	copy fasta	EPPK1	chr8	143852324	143883467
EPRS1_chr1_219963600_220051505	0/1	a0001	1512	273	59	48	128	8	29	copy fasta	EPRS1	chr1	219963600	220051505
EPRS1_chr1_219963600_220051505	1/0	a0002	1512	29	1	5	12	4	6	copy fasta	EPRS1	chr1	219963600	220051505
EPRS1_chr1_219963600_220051505	0/0	a0003	1512	24	10	3	8	0	3	copy fasta	EPRS1	chr1	219963600	220051505
EPRS1_chr1_219963600_220051505	0/0	a0004	1512	10	10	0	0	0	0	copy fasta	EPRS1	chr1	219963600	220051505
EPRS1_chr1_219963600_220051505	0/0	a0005	1512	3	0	3	0	0	0	copy fasta	EPRS1	chr1	219963600	220051505
EPRS1_chr1_219963600_220051505	0/0	a0006	1512	3	3	0	0	0	0	copy fasta	EPRS1	chr1	219963600	220051505
EPRS1_chr1_219963600_220051505	0/0	a0007	1512	2	2	0	0	0	0	copy fasta	EPRS1	chr1	219963600	220051505
EPRS1_chr1_219963600_220051505	0/0	a0008	1512	2	2	0	0	0	0	copy fasta	EPRS1	chr1	219963600	220051505
EPRS1_chr1_219963600_220051505	0/0	a0009	1512	1	0	0	0	0	1	copy fasta	EPRS1	chr1	219963600	220051505
EPRS1_chr1_219963600_220051505	0/0	a0010	1512	1	0	0	1	0	0	copy fasta	EPRS1	chr1	219963600	220051505
EPRS1_chr1_219963600_220051505	0/0	a0011	1512	1	0	0	1	0	0	copy fasta	EPRS1	chr1	219963600	220051505
EPRS1_chr1_219963600_220051505	0/0	a0012	1512	1	1	0	0	0	0	copy fasta	EPRS1	chr1	219963600	220051505
EPRS1_chr1_219963600_220051505	0/0	a0013	1512	1	1	0	0	0	0	copy fasta	EPRS1	chr1	219963600	220051505
EPRS1_chr1_219963600_220051505	0/0	a0014	1512	1	1	0	0	0	0	copy fasta	EPRS1	chr1	219963600	220051505