Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ADTRP_chr6_11708523_11783803	0/0	a0002	230	76	8	2	62	1	3	copy fasta	ADTRP	chr6	11708523	11783803
ADTRP_chr6_11708523_11783803	0/0	a0003	230	8	6	2	0	0	0	copy fasta	ADTRP	chr6	11708523	11783803
ADTRP_chr6_11708523_11783803	0/0	a0004	230	3	0	0	3	0	0	copy fasta	ADTRP	chr6	11708523	11783803
ADTRP_chr6_11708523_11783803	0/0	a0005	230	1	0	0	0	0	1	copy fasta	ADTRP	chr6	11708523	11783803
AEBP1_chr7_44099345_44119560	1/0	a0001	1158	169	35	26	88	8	11	copy fasta	AEBP1	chr7	44099345	44119560
AEBP1_chr7_44099345_44119560	0/1	a0002	1158	110	20	23	48	6	12	copy fasta	AEBP1	chr7	44099345	44119560
AEBP1_chr7_44099345_44119560	0/0	a0003	1158	101	19	17	45	3	17	copy fasta	AEBP1	chr7	44099345	44119560
AEBP1_chr7_44099345_44119560	0/0	a0004	1158	18	13	2	0	1	2	copy fasta	AEBP1	chr7	44099345	44119560
AEBP1_chr7_44099345_44119560	0/0	a0005	1158	12	0	0	10	0	2	copy fasta	AEBP1	chr7	44099345	44119560
AEBP1_chr7_44099345_44119560	0/0	a0006	1158	6	6	0	0	0	0	copy fasta	AEBP1	chr7	44099345	44119560
AEBP1_chr7_44099345_44119560	0/0	a0007	1158	2	0	0	2	0	0	copy fasta	AEBP1	chr7	44099345	44119560
AEBP1_chr7_44099345_44119560	0/0	a0008	1158	2	0	2	0	0	0	copy fasta	AEBP1	chr7	44099345	44119560
AEBP1_chr7_44099345_44119560	0/0	a0009	1158	1	0	0	0	0	1	copy fasta	AEBP1	chr7	44099345	44119560
AEBP1_chr7_44099345_44119560	0/0	a0010	1158	1	1	0	0	0	0	copy fasta	AEBP1	chr7	44099345	44119560
AEBP1_chr7_44099345_44119560	0/0	a0011	1158	1	0	0	1	0	0	copy fasta	AEBP1	chr7	44099345	44119560
AEBP1_chr7_44099345_44119560	0/0	a0012	1150	1	0	0	0	0	1	copy fasta	AEBP1	chr7	44099345	44119560
AEBP1_chr7_44099345_44119560	0/0	a0013	1158	1	0	0	1	0	0	copy fasta	AEBP1	chr7	44099345	44119560
AEBP1_chr7_44099345_44119560	0/0	a0014	911	1	0	0	1	0	0	copy fasta	AEBP1	chr7	44099345	44119560
AEBP2_chr12_19434492_19527227	1/1	a0001	503	403	96	74	181	10	40	copy fasta	AEBP2	chr12	19434492	19527227
AEBP2_chr12_19434492_19527227	0/0	a0002	495	1	0	0	1	0	0	copy fasta	AEBP2	chr12	19434492	19527227
AEN_chr15_88616340_88637281	0/1	a0001	325	258	22	52	147	10	26	copy fasta	AEN	chr15	88616340	88637281
AEN_chr15_88616340_88637281	1/0	a0002	325	118	38	16	57	0	6	copy fasta	AEN	chr15	88616340	88637281
AEN_chr15_88616340_88637281	0/0	a0003	325	28	17	4	4	2	1	copy fasta	AEN	chr15	88616340	88637281
AEN_chr15_88616340_88637281	0/0	a0004	325	17	9	3	0	1	4	copy fasta	AEN	chr15	88616340	88637281
AEN_chr15_88616340_88637281	0/0	a0005	325	9	9	0	0	0	0	copy fasta	AEN	chr15	88616340	88637281
AEN_chr15_88616340_88637281	0/0	a0006	325	3	0	1	0	1	1	copy fasta	AEN	chr15	88616340	88637281
AEN_chr15_88616340_88637281	0/0	a0007	325	2	0	0	1	0	1	copy fasta	AEN	chr15	88616340	88637281
AEN_chr15_88616340_88637281	0/0	a0008	325	1	1	0	0	0	0	copy fasta	AEN	chr15	88616340	88637281
AEN_chr15_88616340_88637281	0/0	a0009	325	1	0	0	0	0	1	copy fasta	AEN	chr15	88616340	88637281
AEN_chr15_88616340_88637281	0/0	a0010	325	1	0	0	1	0	0	copy fasta	AEN	chr15	88616340	88637281
AEN_chr15_88616340_88637281	0/0	a0011	325	1	0	0	1	0	0	copy fasta	AEN	chr15	88616340	88637281
AEN_chr15_88616340_88637281	0/0	a0012	325	1	0	0	1	0	0	copy fasta	AEN	chr15	88616340	88637281
AFAP1L1_chr5_149266859_149348637	1/1	a0001	768	261	62	56	100	9	32	copy fasta	AFAP1L1	chr5	149266859	149348637
AFAP1L1_chr5_149266859_149348637	0/0	a0002	768	11	10	1	0	0	0	copy fasta	AFAP1L1	chr5	149266859	149348637
AFAP1L1_chr5_149266859_149348637	0/0	a0003	768	3	1	1	0	1	0	copy fasta	AFAP1L1	chr5	149266859	149348637
AFAP1L1_chr5_149266859_149348637	0/0	a0004	768	3	3	0	0	0	0	copy fasta	AFAP1L1	chr5	149266859	149348637
AFAP1L1_chr5_149266859_149348637	0/0	a0005	768	2	0	0	0	0	2	copy fasta	AFAP1L1	chr5	149266859	149348637
AFAP1L1_chr5_149266859_149348637	0/0	a0006	768	2	1	1	0	0	0	copy fasta	AFAP1L1	chr5	149266859	149348637
AFAP1L1_chr5_149266859_149348637	0/0	a0007	768	1	0	1	0	0	0	copy fasta	AFAP1L1	chr5	149266859	149348637
AFAP1L1_chr5_149266859_149348637	0/0	a0008	768	1	1	0	0	0	0	copy fasta	AFAP1L1	chr5	149266859	149348637
AFAP1L1_chr5_149266859_149348637	0/0	a0009	768	1	1	0	0	0	0	copy fasta	AFAP1L1	chr5	149266859	149348637
AFAP1L1_chr5_149266859_149348637	0/0	a0010	768	1	1	0	0	0	0	copy fasta	AFAP1L1	chr5	149266859	149348637
AFAP1L2_chr10_114289824_114409502	1/1	a0001	818	212	44	39	84	10	33	copy fasta	AFAP1L2	chr10	114289824	114409502
AFAP1L2_chr10_114289824_114409502	0/0	a0002	818	20	20	0	0	0	0	copy fasta	AFAP1L2	chr10	114289824	114409502
AFAP1L2_chr10_114289824_114409502	0/0	a0003	818	8	7	1	0	0	0	copy fasta	AFAP1L2	chr10	114289824	114409502
AFAP1L2_chr10_114289824_114409502	0/0	a0004	818	7	7	0	0	0	0	copy fasta	AFAP1L2	chr10	114289824	114409502
AFAP1L2_chr10_114289824_114409502	0/0	a0005	818	5	0	2	0	0	3	copy fasta	AFAP1L2	chr10	114289824	114409502
AFAP1L2_chr10_114289824_114409502	0/0	a0006	818	2	0	2	0	0	0	copy fasta	AFAP1L2	chr10	114289824	114409502
AFAP1L2_chr10_114289824_114409502	0/0	a0007	818	2	2	0	0	0	0	copy fasta	AFAP1L2	chr10	114289824	114409502
AFAP1L2_chr10_114289824_114409502	0/0	a0008	818	1	1	0	0	0	0	copy fasta	AFAP1L2	chr10	114289824	114409502