JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
EPRS1_chr1_219963600_220051505	0/0	a0015	1512	1	1	0	0	0	0	copy fasta	EPRS1	chr1	219963600	220051505
EPRS1_chr1_219963600_220051505	0/0	a0016	1512	1	0	1	0	0	0	copy fasta	EPRS1	chr1	219963600	220051505
EPRS1_chr1_219963600_220051505	0/0	a0017	1512	1	0	0	1	0	0	copy fasta	EPRS1	chr1	219963600	220051505
EPRS1_chr1_219963600_220051505	0/0	a0018	1512	1	0	0	0	0	1	copy fasta	EPRS1	chr1	219963600	220051505
EPRS1_chr1_219963600_220051505	0/0	a0019	1512	1	1	0	0	0	0	copy fasta	EPRS1	chr1	219963600	220051505
EPRS1_chr1_219963600_220051505	0/0	a0020	1512	1	0	0	1	0	0	copy fasta	EPRS1	chr1	219963600	220051505
EPS15L1_chr19_16350247_16476970	1/1	a0001	910	271	82	54	95	8	30	copy fasta	EPS15L1	chr19	16350247	16476970
EPS15L1_chr19_16350247_16476970	0/0	a0002	910	3	0	0	3	0	0	copy fasta	EPS15L1	chr19	16350247	16476970
EPS15L1_chr19_16350247_16476970	0/0	a0003	910	1	0	0	1	0	0	copy fasta	EPS15L1	chr19	16350247	16476970
EPS15L1_chr19_16350247_16476970	0/0	a0004	910	1	0	0	1	0	0	copy fasta	EPS15L1	chr19	16350247	16476970
EPS15_chr1_51349263_51524266	1/0	a0001	896	75	26	19	10	3	16	copy fasta	EPS15	chr1	51349263	51524266
EPS15_chr1_51349263_51524266	0/1	a0002	896	68	44	11	0	6	6	copy fasta	EPS15	chr1	51349263	51524266
EPS15_chr1_51349263_51524266	0/0	a0003	896	2	0	1	0	1	0	copy fasta	EPS15	chr1	51349263	51524266
EPS15_chr1_51349263_51524266	0/0	a0004	896	1	1	0	0	0	0	copy fasta	EPS15	chr1	51349263	51524266
EPS15_chr1_51349263_51524266	0/0	a0005	896	1	1	0	0	0	0	copy fasta	EPS15	chr1	51349263	51524266
EPS15_chr1_51349263_51524266	0/0	a0006	896	1	0	1	0	0	0	copy fasta	EPS15	chr1	51349263	51524266
EPS15_chr1_51349263_51524266	0/0	a0007	896	1	1	0	0	0	0	copy fasta	EPS15	chr1	51349263	51524266
EPS15_chr1_51349263_51524266	0/0	a0008	896	1	1	0	0	0	0	copy fasta	EPS15	chr1	51349263	51524266
EPS15_chr1_51349263_51524266	0/0	a0009	896	1	1	0	0	0	0	copy fasta	EPS15	chr1	51349263	51524266
EPS15_chr1_51349263_51524266	0/0	a0010	896	1	1	0	0	0	0	copy fasta	EPS15	chr1	51349263	51524266
EPS8L1_chr19_55070869_55092923	1/1	a0001	723	191	57	44	67	4	17	copy fasta	EPS8L1	chr19	55070869	55092923
EPS8L1_chr19_55070869_55092923	0/0	a0002	723	92	16	12	41	2	21	copy fasta	EPS8L1	chr19	55070869	55092923
EPS8L1_chr19_55070869_55092923	0/0	a0003	723	30	1	11	14	2	2	copy fasta	EPS8L1	chr19	55070869	55092923
EPS8L1_chr19_55070869_55092923	0/0	a0004	723	13	8	3	2	0	0	copy fasta	EPS8L1	chr19	55070869	55092923
EPS8L1_chr19_55070869_55092923	0/0	a0005	723	4	4	0	0	0	0	copy fasta	EPS8L1	chr19	55070869	55092923
EPS8L1_chr19_55070869_55092923	0/0	a0006	723	3	3	0	0	0	0	copy fasta	EPS8L1	chr19	55070869	55092923
EPS8L1_chr19_55070869_55092923	0/0	a0007	723	1	1	0	0	0	0	copy fasta	EPS8L1	chr19	55070869	55092923
EPS8L1_chr19_55070869_55092923	0/0	a0008	723	1	1	0	0	0	0	copy fasta	EPS8L1	chr19	55070869	55092923
EPS8L1_chr19_55070869_55092923	0/0	a0009	723	1	1	0	0	0	0	copy fasta	EPS8L1	chr19	55070869	55092923
EPS8L1_chr19_55070869_55092923	0/0	a0010	723	1	0	0	1	0	0	copy fasta	EPS8L1	chr19	55070869	55092923
EPS8L1_chr19_55070869_55092923	0/0	a0011	723	1	0	0	1	0	0	copy fasta	EPS8L1	chr19	55070869	55092923
EPS8L1_chr19_55070869_55092923	0/0	a0012	723	1	1	0	0	0	0	copy fasta	EPS8L1	chr19	55070869	55092923
EPS8L1_chr19_55070869_55092923	0/0	a0013	723	1	1	0	0	0	0	copy fasta	EPS8L1	chr19	55070869	55092923
EPS8L2_chr11_701231_732727	1/1	a0001	715	385	83	71	164	15	50	copy fasta	EPS8L2	chr11	701231	732727
EPS8L2_chr11_701231_732727	0/0	a0002	715	7	6	0	0	1	0	copy fasta	EPS8L2	chr11	701231	732727
EPS8L2_chr11_701231_732727	0/0	a0003	715	6	4	0	0	2	0	copy fasta	EPS8L2	chr11	701231	732727
EPS8L2_chr11_701231_732727	0/0	a0004	715	4	2	2	0	0	0	copy fasta	EPS8L2	chr11	701231	732727
EPS8L2_chr11_701231_732727	0/0	a0005	307	1	1	0	0	0	0	copy fasta	EPS8L2	chr11	701231	732727
EPS8L2_chr11_701231_732727	0/0	a0006	715	1	0	1	0	0	0	copy fasta	EPS8L2	chr11	701231	732727
EPS8L2_chr11_701231_732727	0/0	a0007	715	1	0	1	0	0	0	copy fasta	EPS8L2	chr11	701231	732727
EPS8L2_chr11_701231_732727	0/0	a0008	715	1	0	1	0	0	0	copy fasta	EPS8L2	chr11	701231	732727
EPS8L3_chr1_109745080_109768923	0/1	a0001	593	203	11	27	132	10	22	copy fasta	EPS8L3	chr1	109745080	109768923
EPS8L3_chr1_109745080_109768923	1/0	a0002	593	98	10	26	46	4	11	copy fasta	EPS8L3	chr1	109745080	109768923
EPS8L3_chr1_109745080_109768923	0/0	a0003	593	35	30	2	0	0	3	copy fasta	EPS8L3	chr1	109745080	109768923
EPS8L3_chr1_109745080_109768923	0/0	a0004	593	33	17	8	7	1	0	copy fasta	EPS8L3	chr1	109745080	109768923
EPS8L3_chr1_109745080_109768923	0/0	a0005	593	19	19	0	0	0	0	copy fasta	EPS8L3	chr1	109745080	109768923
EPS8L3_chr1_109745080_109768923	0/0	a0006	593	15	0	2	7	1	5	copy fasta	EPS8L3	chr1	109745080	109768923
EPS8L3_chr1_109745080_109768923	0/0	a0007	593	4	2	2	0	0	0	copy fasta	EPS8L3	chr1	109745080	109768923
EPS8L3_chr1_109745080_109768923	0/0	a0008	593	4	0	2	2	0	0	copy fasta	EPS8L3	chr1	109745080	109768923
EPS8L3_chr1_109745080_109768923	0/0	a0009	593	3	3	0	0	0	0	copy fasta	EPS8L3	chr1	109745080	109768923