JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
EPX_chr17_58187726_58210174	0/0	a0028	715	1	1	0	0	0	0	copy fasta	EPX	chr17	58187726	58210174
EPX_chr17_58187726_58210174	0/0	a0029	715	1	0	0	0	0	1	copy fasta	EPX	chr17	58187726	58210174
EPX_chr17_58187726_58210174	0/0	a0030	715	1	0	0	0	1	0	copy fasta	EPX	chr17	58187726	58210174
EPX_chr17_58187726_58210174	0/0	a0031	715	1	0	0	1	0	0	copy fasta	EPX	chr17	58187726	58210174
EPX_chr17_58187726_58210174	0/0	a0032	715	1	0	0	1	0	0	copy fasta	EPX	chr17	58187726	58210174
EPX_chr17_58187726_58210174	0/0	a0033	715	1	1	0	0	0	0	copy fasta	EPX	chr17	58187726	58210174
EPX_chr17_58187726_58210174	0/0	a0034	715	1	1	0	0	0	0	copy fasta	EPX	chr17	58187726	58210174
EPYC_chr12_90958682_91009972	1/1	a0001	322	332	88	59	155	4	24	copy fasta	EPYC	chr12	90958682	91009972
EPYC_chr12_90958682_91009972	0/0	a0002	322	8	0	5	1	0	2	copy fasta	EPYC	chr12	90958682	91009972
EPYC_chr12_90958682_91009972	0/0	a0003	322	2	2	0	0	0	0	copy fasta	EPYC	chr12	90958682	91009972
EPYC_chr12_90958682_91009972	0/0	a0004	322	1	0	0	0	0	1	copy fasta	EPYC	chr12	90958682	91009972
EPYC_chr12_90958682_91009972	0/0	a0005	322	1	0	0	0	0	1	copy fasta	EPYC	chr12	90958682	91009972
EPYC_chr12_90958682_91009972	0/0	a0006	322	1	1	0	0	0	0	copy fasta	EPYC	chr12	90958682	91009972
EPYC_chr12_90958682_91009972	0/0	a0007	322	1	1	0	0	0	0	copy fasta	EPYC	chr12	90958682	91009972
EQTN_chr9_27279654_27302150	1/1	a0001	294	406	76	75	190	15	48	copy fasta	EQTN	chr9	27279654	27302150
EQTN_chr9_27279654_27302150	0/0	a0002	294	21	13	4	3	0	1	copy fasta	EQTN	chr9	27279654	27302150
EQTN_chr9_27279654_27302150	0/0	a0003	294	17	3	5	7	1	1	copy fasta	EQTN	chr9	27279654	27302150
EQTN_chr9_27279654_27302150	0/0	a0004	294	1	1	0	0	0	0	copy fasta	EQTN	chr9	27279654	27302150
EQTN_chr9_27279654_27302150	0/0	a0005	294	1	1	0	0	0	0	copy fasta	EQTN	chr9	27279654	27302150
ERAL1_chr17_28850016_28866061	1/1	a0001	437	377	93	59	175	8	40	copy fasta	ERAL1	chr17	28850016	28866061
ERAL1_chr17_28850016_28866061	0/0	a0002	437	1	1	0	0	0	0	copy fasta	ERAL1	chr17	28850016	28866061
ERAL1_chr17_28850016_28866061	0/0	a0003	437	1	0	0	1	0	0	copy fasta	ERAL1	chr17	28850016	28866061
ERAL1_chr17_28850016_28866061	0/0	a0004	437	1	0	1	0	0	0	copy fasta	ERAL1	chr17	28850016	28866061
ERAP1_chr5_96769484_96812945	1/0	a0001	941	112	27	13	60	5	6	copy fasta	ERAP1	chr5	96769484	96812945
ERAP1_chr5_96769484_96812945	0/0	a0002	941	76	7	5	48	4	12	copy fasta	ERAP1	chr5	96769484	96812945
ERAP1_chr5_96769484_96812945	0/0	a0003	941	46	6	15	19	2	4	copy fasta	ERAP1	chr5	96769484	96812945
ERAP1_chr5_96769484_96812945	0/0	a0004	941	44	2	3	37	1	1	copy fasta	ERAP1	chr5	96769484	96812945
ERAP1_chr5_96769484_96812945	0/0	a0005	941	33	14	4	8	1	6	copy fasta	ERAP1	chr5	96769484	96812945
ERAP1_chr5_96769484_96812945	0/0	a0006	941	20	2	9	0	4	5	copy fasta	ERAP1	chr5	96769484	96812945
ERAP1_chr5_96769484_96812945	0/1	a0007	941	16	4	10	0	1	0	copy fasta	ERAP1	chr5	96769484	96812945
ERAP1_chr5_96769484_96812945	0/0	a0008	941	16	0	8	7	0	1	copy fasta	ERAP1	chr5	96769484	96812945
ERAP1_chr5_96769484_96812945	0/0	a0009	941	15	8	4	0	0	3	copy fasta	ERAP1	chr5	96769484	96812945
ERAP1_chr5_96769484_96812945	0/0	a0010	941	9	7	2	0	0	0	copy fasta	ERAP1	chr5	96769484	96812945
ERAP1_chr5_96769484_96812945	0/0	a0011	941	8	0	3	2	0	3	copy fasta	ERAP1	chr5	96769484	96812945
ERAP1_chr5_96769484_96812945	0/0	a0012	941	4	4	0	0	0	0	copy fasta	ERAP1	chr5	96769484	96812945
ERAP1_chr5_96769484_96812945	0/0	a0013	941	3	0	2	0	0	1	copy fasta	ERAP1	chr5	96769484	96812945
ERAP1_chr5_96769484_96812945	0/0	a0014	941	3	3	0	0	0	0	copy fasta	ERAP1	chr5	96769484	96812945
ERAP1_chr5_96769484_96812945	0/0	a0015	941	2	2	0	0	0	0	copy fasta	ERAP1	chr5	96769484	96812945
ERAP1_chr5_96769484_96812945	0/0	a0016	662	2	2	0	0	0	0	copy fasta	ERAP1	chr5	96769484	96812945
ERAP1_chr5_96769484_96812945	0/0	a0017	941	2	1	0	1	0	0	copy fasta	ERAP1	chr5	96769484	96812945
ERAP1_chr5_96769484_96812945	0/0	a0018	941	1	1	0	0	0	0	copy fasta	ERAP1	chr5	96769484	96812945
ERAP1_chr5_96769484_96812945	0/0	a0019	941	1	0	1	0	0	0	copy fasta	ERAP1	chr5	96769484	96812945
ERAP1_chr5_96769484_96812945	0/0	a0020	941	1	1	0	0	0	0	copy fasta	ERAP1	chr5	96769484	96812945
ERAP1_chr5_96769484_96812945	0/0	a0021	941	1	0	1	0	0	0	copy fasta	ERAP1	chr5	96769484	96812945
ERAP1_chr5_96769484_96812945	0/0	a0022	941	1	1	0	0	0	0	copy fasta	ERAP1	chr5	96769484	96812945
ERAP2_chr5_96871500_96924703	0/0	a0000	0	2	0	0	2	0	0	copy fasta	ERAP2	chr5	96871500	96924703
ERAP2_chr5_96871500_96924703	0/1	a0001	960	193	56	39	69	9	19	copy fasta	ERAP2	chr5	96871500	96924703
ERAP2_chr5_96871500_96924703	1/0	a0002	960	127	27	25	58	2	14	copy fasta	ERAP2	chr5	96871500	96924703
ERAP2_chr5_96871500_96924703	0/0	a0003	960	30	0	2	26	0	2	copy fasta	ERAP2	chr5	96871500	96924703
ERAP2_chr5_96871500_96924703	0/0	a0004	960	15	0	1	14	0	0	copy fasta	ERAP2	chr5	96871500	96924703