JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ERCC4_chr16_13915154_13957348	1/0	a0001	916	303	65	54	143	10	30	copy fasta	ERCC4	chr16	13915154	13957348
ERCC4_chr16_13915154_13957348	0/0	a0002	916	19	17	2	0	0	0	copy fasta	ERCC4	chr16	13915154	13957348
ERCC4_chr16_13915154_13957348	0/0	a0003	916	6	0	2	0	3	1	copy fasta	ERCC4	chr16	13915154	13957348
ERCC4_chr16_13915154_13957348	0/0	a0004	916	3	0	3	0	0	0	copy fasta	ERCC4	chr16	13915154	13957348
ERCC4_chr16_13915154_13957348	0/0	a0005	916	3	0	1	0	1	1	copy fasta	ERCC4	chr16	13915154	13957348
ERCC4_chr16_13915154_13957348	0/0	a0006	916	2	2	0	0	0	0	copy fasta	ERCC4	chr16	13915154	13957348
ERCC4_chr16_13915154_13957348	0/0	a0007	916	1	1	0	0	0	0	copy fasta	ERCC4	chr16	13915154	13957348
ERCC4_chr16_13915154_13957348	0/0	a0008	916	1	1	0	0	0	0	copy fasta	ERCC4	chr16	13915154	13957348
ERCC4_chr16_13915154_13957348	0/0	a0009	916	1	0	0	1	0	0	copy fasta	ERCC4	chr16	13915154	13957348
ERCC4_chr16_13915154_13957348	0/1	a0010	916	1	0	0	0	0	0	copy fasta	ERCC4	chr16	13915154	13957348
ERCC5_chr13_102841032_102880995	0/1	a0001	1186	188	29	41	86	8	23	copy fasta	ERCC5	chr13	102841032	102880995
ERCC5_chr13_102841032_102880995	0/0	a0002	1186	140	41	15	71	6	7	copy fasta	ERCC5	chr13	102841032	102880995
ERCC5_chr13_102841032_102880995	0/0	a0003	1186	17	4	1	8	0	4	copy fasta	ERCC5	chr13	102841032	102880995
ERCC5_chr13_102841032_102880995	0/0	a0004	1186	12	8	4	0	0	0	copy fasta	ERCC5	chr13	102841032	102880995
ERCC5_chr13_102841032_102880995	0/0	a0005	1186	7	0	2	0	1	4	copy fasta	ERCC5	chr13	102841032	102880995
ERCC5_chr13_102841032_102880995	0/0	a0006	1186	4	4	0	0	0	0	copy fasta	ERCC5	chr13	102841032	102880995
ERCC5_chr13_102841032_102880995	1/0	a0007	1186	4	3	0	0	0	0	copy fasta	ERCC5	chr13	102841032	102880995
ERCC5_chr13_102841032_102880995	0/0	a0008	1186	3	3	0	0	0	0	copy fasta	ERCC5	chr13	102841032	102880995
ERCC5_chr13_102841032_102880995	0/0	a0009	1186	3	0	0	3	0	0	copy fasta	ERCC5	chr13	102841032	102880995
ERCC5_chr13_102841032_102880995	0/0	a0010	1186	2	0	1	0	1	0	copy fasta	ERCC5	chr13	102841032	102880995
ERCC5_chr13_102841032_102880995	0/0	a0011	1186	2	0	2	0	0	0	copy fasta	ERCC5	chr13	102841032	102880995
ERCC5_chr13_102841032_102880995	0/0	a0012	1186	2	2	0	0	0	0	copy fasta	ERCC5	chr13	102841032	102880995
ERCC5_chr13_102841032_102880995	0/0	a0013	1186	1	1	0	0	0	0	copy fasta	ERCC5	chr13	102841032	102880995
ERCC5_chr13_102841032_102880995	0/0	a0014	1186	1	0	0	0	0	1	copy fasta	ERCC5	chr13	102841032	102880995
ERCC5_chr13_102841032_102880995	0/0	a0015	1186	1	0	0	1	0	0	copy fasta	ERCC5	chr13	102841032	102880995
ERCC5_chr13_102841032_102880995	0/0	a0016	1186	1	0	0	1	0	0	copy fasta	ERCC5	chr13	102841032	102880995
ERCC5_chr13_102841032_102880995	0/0	a0017	1186	1	0	0	1	0	0	copy fasta	ERCC5	chr13	102841032	102880995
ERCC5_chr13_102841032_102880995	0/0	a0018	1186	1	0	0	0	0	1	copy fasta	ERCC5	chr13	102841032	102880995
ERCC5_chr13_102841032_102880995	0/0	a0019	1186	1	1	0	0	0	0	copy fasta	ERCC5	chr13	102841032	102880995
ERCC5_chr13_102841032_102880995	0/0	a0020	1186	1	1	0	0	0	0	copy fasta	ERCC5	chr13	102841032	102880995
ERCC5_chr13_102841032_102880995	0/0	a0021	1186	1	0	0	1	0	0	copy fasta	ERCC5	chr13	102841032	102880995
ERCC5_chr13_102841032_102880995	0/0	a0022	1186	1	1	0	0	0	0	copy fasta	ERCC5	chr13	102841032	102880995
ERCC6L2_chr9_95870691_96023447	1/1	a0001	1550	221	51	40	99	8	21	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	a0002	1550	74	10	16	35	3	10	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	a0003	1550	31	0	5	25	1	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	a0004	1550	28	4	13	8	0	3	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	a0005	1550	7	6	1	0	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	a0006	1550	5	5	0	0	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	a0007	1550	4	4	0	0	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	a0008	1550	2	2	0	0	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	a0009	1550	2	0	0	2	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	a0010	1550	2	2	0	0	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	a0011	1550	2	2	0	0	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	a0012	13	1	1	0	0	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	a0013	1550	1	1	0	0	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	a0014	1550	1	0	1	0	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	a0015	1550	1	0	1	0	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	a0016	1550	1	0	1	0	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	a0017	1550	1	0	0	0	0	1	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	a0018	1550	1	0	0	1	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447