JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ERCC6L2_chr9_95870691_96023447	0/0	a0019	1550	1	1	0	0	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	a0020	1550	1	1	0	0	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	a0021	1550	1	1	0	0	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	a0022	1550	1	0	0	1	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	a0023	1550	1	0	0	0	0	1	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	a0024	1550	1	0	0	1	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	a0025	1550	1	1	0	0	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L_chrX_72199665_72244027	1/1	a0001	1250	275	66	46	124	9	28	copy fasta	ERCC6L	chrX	72199665	72244027
ERCC6L_chrX_72199665_72244027	0/0	a0002	1250	4	4	0	0	0	0	copy fasta	ERCC6L	chrX	72199665	72244027
ERCC6L_chrX_72199665_72244027	0/0	a0003	56	1	0	0	1	0	0	copy fasta	ERCC6L	chrX	72199665	72244027
ERCC6L_chrX_72199665_72244027	0/0	a0004	1250	1	1	0	0	0	0	copy fasta	ERCC6L	chrX	72199665	72244027
ERCC6L_chrX_72199665_72244027	0/0	a0005	160	1	0	0	1	0	0	copy fasta	ERCC6L	chrX	72199665	72244027
ERCC6L_chrX_72199665_72244027	0/0	a0006	207	1	0	0	1	0	0	copy fasta	ERCC6L	chrX	72199665	72244027
ERCC6L_chrX_72199665_72244027	0/0	a0007	1250	1	0	1	0	0	0	copy fasta	ERCC6L	chrX	72199665	72244027
ERCC6L_chrX_72199665_72244027	0/0	a0008	1250	1	1	0	0	0	0	copy fasta	ERCC6L	chrX	72199665	72244027
ERCC6L_chrX_72199665_72244027	0/0	a0009	1250	1	0	0	1	0	0	copy fasta	ERCC6L	chrX	72199665	72244027
ERCC6_chr10_49449470_49544121	1/0	a0001	1493	173	39	29	78	4	22	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/1	a0002	1493	81	16	7	54	2	1	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	a0003	1493	45	4	15	9	2	15	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	a0004	1493	36	2	4	30	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	a0005	1493	11	9	2	0	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	a0006	1493	6	4	2	0	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	a0007	1493	4	4	0	0	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	a0008	1493	3	0	0	3	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	a0009	1493	3	2	1	0	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	a0010	1493	2	0	0	2	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	a0011	1493	2	0	0	2	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	a0012	1493	2	0	2	0	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	a0013	1493	2	0	2	0	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	a0014	1493	2	2	0	0	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	a0015	1493	1	0	1	0	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	a0016	1493	1	0	1	0	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	a0017	1493	1	0	0	1	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	a0018	1493	1	1	0	0	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	a0019	1493	1	0	0	1	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	a0020	1493	1	0	0	0	0	1	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	a0021	1493	1	1	0	0	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	a0022	1493	1	0	0	1	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	a0023	1493	1	1	0	0	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	a0024	1493	1	0	0	0	0	1	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	a0025	1493	1	1	0	0	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	a0026	1493	1	0	0	1	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	a0027	1493	1	0	0	1	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	a0028	1493	1	1	0	0	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	a0029	1493	1	1	0	0	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	a0030	1493	1	0	0	1	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49510198_49544121	0/0	a0001	1061	261	67	49	99	7	39	copy fasta	ERCC6	chr10	49510198	49544121
ERCC6_chr10_49510198_49544121	0/1	a0002	1061	124	17	16	87	2	1	copy fasta	ERCC6	chr10	49510198	49544121
ERCC6_chr10_49510198_49544121	1/0	a0003	1061	3	2	0	0	0	0	copy fasta	ERCC6	chr10	49510198	49544121
ERCC6_chr10_49510198_49544121	0/0	a0004	1061	3	2	1	0	0	0	copy fasta	ERCC6	chr10	49510198	49544121