JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ERCC6_chr10_49510198_49544121	0/0	a0005	1061	2	0	0	2	0	0	copy fasta	ERCC6	chr10	49510198	49544121
ERCC6_chr10_49510198_49544121	0/0	a0006	1061	2	2	0	0	0	0	copy fasta	ERCC6	chr10	49510198	49544121
ERCC6_chr10_49510198_49544121	0/0	a0007	1061	2	0	2	0	0	0	copy fasta	ERCC6	chr10	49510198	49544121
ERCC6_chr10_49510198_49544121	0/0	a0008	1061	1	0	0	1	0	0	copy fasta	ERCC6	chr10	49510198	49544121
ERCC6_chr10_49510198_49544121	0/0	a0009	1061	1	0	1	0	0	0	copy fasta	ERCC6	chr10	49510198	49544121
ERCC6_chr10_49510198_49544121	0/0	a0010	1061	1	0	0	0	1	0	copy fasta	ERCC6	chr10	49510198	49544121
ERCC6_chr10_49510198_49544121	0/0	a0011	1061	1	0	1	0	0	0	copy fasta	ERCC6	chr10	49510198	49544121
ERCC6_chr10_49510198_49544121	0/0	a0012	1061	1	0	0	1	0	0	copy fasta	ERCC6	chr10	49510198	49544121
ERCC8_chr5_60861454_60950070	1/1	a0001	396	301	88	56	104	16	35	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	a0002	396	1	0	0	0	0	1	copy fasta	ERCC8	chr5	60861454	60950070
EREG_chr4_74360145_74393749	1/0	a0001	169	350	95	45	162	12	35	copy fasta	EREG	chr4	74360145	74393749
EREG_chr4_74360145_74393749	0/0	a0002	169	3	3	0	0	0	0	copy fasta	EREG	chr4	74360145	74393749
EREG_chr4_74360145_74393749	0/1	a0003	169	3	0	1	0	0	1	copy fasta	EREG	chr4	74360145	74393749
EREG_chr4_74360145_74393749	0/0	a0004	169	1	0	0	1	0	0	copy fasta	EREG	chr4	74360145	74393749
EREG_chr4_74360145_74393749	0/0	a0005	169	1	0	0	1	0	0	copy fasta	EREG	chr4	74360145	74393749
ERFE_chr2_238153970_238173890	1/1	a0001	354	388	76	71	181	17	41	copy fasta	ERFE	chr2	238153970	238173890
ERFE_chr2_238153970_238173890	0/0	a0002	354	45	12	5	26	0	2	copy fasta	ERFE	chr2	238153970	238173890
ERFE_chr2_238153970_238173890	0/0	a0003	354	10	0	1	6	1	2	copy fasta	ERFE	chr2	238153970	238173890
ERFE_chr2_238153970_238173890	0/0	a0004	354	4	0	0	4	0	0	copy fasta	ERFE	chr2	238153970	238173890
ERFE_chr2_238153970_238173890	0/0	a0005	354	3	3	0	0	0	0	copy fasta	ERFE	chr2	238153970	238173890
ERFE_chr2_238153970_238173890	0/0	a0006	354	2	0	1	0	0	1	copy fasta	ERFE	chr2	238153970	238173890
ERFE_chr2_238153970_238173890	0/0	a0007	354	2	0	0	0	0	2	copy fasta	ERFE	chr2	238153970	238173890
ERFE_chr2_238153970_238173890	0/0	a0008	354	1	0	0	1	0	0	copy fasta	ERFE	chr2	238153970	238173890
ERFE_chr2_238153970_238173890	0/0	a0009	354	1	1	0	0	0	0	copy fasta	ERFE	chr2	238153970	238173890
ERFL_chr19_41902704_41933449	0/0	a0000	0	11	0	2	5	0	4	copy fasta	ERFL	chr19	41902704	41933449
ERFL_chr19_41902704_41933449	1/1	a0001	354	314	88	54	122	15	33	copy fasta	ERFL	chr19	41902704	41933449
ERFL_chr19_41902704_41933449	0/0	a0002	354	1	0	0	0	0	1	copy fasta	ERFL	chr19	41902704	41933449
ERFL_chr19_41902704_41933449	0/0	a0003	354	1	1	0	0	0	0	copy fasta	ERFL	chr19	41902704	41933449
ERFL_chr19_41902704_41933449	0/0	a0004	354	1	0	0	1	0	0	copy fasta	ERFL	chr19	41902704	41933449
ERFL_chr19_41902704_41933449	0/0	a0005	354	1	0	0	0	1	0	copy fasta	ERFL	chr19	41902704	41933449
ERFL_chr19_41902704_41933449	0/0	a0006	354	1	1	0	0	0	0	copy fasta	ERFL	chr19	41902704	41933449
ERF_chr19_42242569_42260128	1/0	a0001	548	262	72	44	95	14	36	copy fasta	ERF	chr19	42242569	42260128
ERF_chr19_42242569_42260128	0/1	a0002	548	5	0	0	4	0	0	copy fasta	ERF	chr19	42242569	42260128
ERF_chr19_42242569_42260128	0/0	a0003	548	1	0	0	1	0	0	copy fasta	ERF	chr19	42242569	42260128
ERG28_chr14_75644791_75665876	1/1	a0001	140	418	90	78	193	14	41	copy fasta	ERG28	chr14	75644791	75665876
ERG28_chr14_75644791_75665876	0/0	a0002	140	1	0	0	1	0	0	copy fasta	ERG28	chr14	75644791	75665876
ERG28_chr14_75644791_75665876	0/0	a0003	140	1	0	0	0	0	1	copy fasta	ERG28	chr14	75644791	75665876
ERGIC1_chr5_172829251_172957683	1/1	a0001	290	332	87	70	123	10	40	copy fasta	ERGIC1	chr5	172829251	172957683
ERGIC1_chr5_172829251_172957683	0/0	a0002	290	1	0	0	1	0	0	copy fasta	ERGIC1	chr5	172829251	172957683
ERGIC1_chr5_172829251_172957683	0/0	a0003	290	1	1	0	0	0	0	copy fasta	ERGIC1	chr5	172829251	172957683
ERGIC2_chr12_29332352_29386172	0/0	a0001	377	404	88	72	194	12	38	copy fasta	ERGIC2	chr12	29332352	29386172
ERGIC3_chr20_35537078_35562634	1/1	a0001	383	364	92	64	148	16	42	copy fasta	ERGIC3	chr20	35537078	35562634
ERG_chr21_38375036_38503477	1/1	a0001	479	358	79	66	162	14	35	copy fasta	ERG	chr21	38375036	38503477
ERG_chr21_38375036_38503477	0/0	a0002	479	1	1	0	0	0	0	copy fasta	ERG	chr21	38375036	38503477
ERG_chr21_38375036_38503477	0/0	a0003	479	1	0	0	0	0	1	copy fasta	ERG	chr21	38375036	38503477
ERH_chr14_69375128_69403299	1/1	a0001	104	398	94	62	176	18	46	copy fasta	ERH	chr14	69375128	69403299
ERI1_chr8_8997897_9038338	0/0	a0000	0	208	7	41	134	5	21	copy fasta	ERI1	chr8	8997897	9038338
ERI1_chr8_8997897_9038338	0/1	a0001	349	133	58	28	21	8	17	copy fasta	ERI1	chr8	8997897	9038338
ERI1_chr8_8997897_9038338	1/0	a0002	349	77	16	11	40	1	8	copy fasta	ERI1	chr8	8997897	9038338
ERI1_chr8_8997897_9038338	0/0	a0003	349	5	5	0	0	0	0	copy fasta	ERI1	chr8	8997897	9038338