JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ERI1_chr8_8997897_9038338	0/0	a0004	349	2	2	0	0	0	0	copy fasta	ERI1	chr8	8997897	9038338
ERI1_chr8_8997897_9038338	0/0	a0005	349	1	0	0	1	0	0	copy fasta	ERI1	chr8	8997897	9038338
ERI2_chr16_20791340_20811472	1/1	a0001	691	277	66	34	147	7	21	copy fasta	ERI2	chr16	20791340	20811472
ERI2_chr16_20791340_20811472	0/0	a0002	691	100	10	34	29	11	16	copy fasta	ERI2	chr16	20791340	20811472
ERI2_chr16_20791340_20811472	0/0	a0003	691	12	6	3	0	0	3	copy fasta	ERI2	chr16	20791340	20811472
ERI2_chr16_20791340_20811472	0/0	a0004	691	7	7	0	0	0	0	copy fasta	ERI2	chr16	20791340	20811472
ERI2_chr16_20791340_20811472	0/0	a0005	691	4	0	0	4	0	0	copy fasta	ERI2	chr16	20791340	20811472
ERI2_chr16_20791340_20811472	0/0	a0006	691	2	2	0	0	0	0	copy fasta	ERI2	chr16	20791340	20811472
ERI2_chr16_20791340_20811472	0/0	a0007	691	2	0	0	0	0	2	copy fasta	ERI2	chr16	20791340	20811472
ERI2_chr16_20791340_20811472	0/0	a0008	691	2	0	0	0	0	2	copy fasta	ERI2	chr16	20791340	20811472
ERI2_chr16_20791340_20811472	0/0	a0009	691	2	0	0	0	0	2	copy fasta	ERI2	chr16	20791340	20811472
ERI2_chr16_20791340_20811472	0/0	a0010	277	1	0	1	0	0	0	copy fasta	ERI2	chr16	20791340	20811472
ERI2_chr16_20791340_20811472	0/0	a0011	691	1	1	0	0	0	0	copy fasta	ERI2	chr16	20791340	20811472
ERI2_chr16_20791340_20811472	0/0	a0012	691	1	1	0	0	0	0	copy fasta	ERI2	chr16	20791340	20811472
ERI2_chr16_20791340_20811472	0/0	a0013	691	1	1	0	0	0	0	copy fasta	ERI2	chr16	20791340	20811472
ERI3_chr1_44216070_44360257	1/1	a0001	337	340	86	60	154	8	30	copy fasta	ERI3	chr1	44216070	44360257
ERICH1_chr8_659200_736224	1/1	a0001	443	356	79	69	141	17	48	copy fasta	ERICH1	chr8	659200	736224
ERICH1_chr8_659200_736224	0/0	a0002	443	4	2	1	0	0	1	copy fasta	ERICH1	chr8	659200	736224
ERICH1_chr8_659200_736224	0/0	a0003	483	4	4	0	0	0	0	copy fasta	ERICH1	chr8	659200	736224
ERICH1_chr8_659200_736224	0/0	a0004	443	3	0	2	0	0	1	copy fasta	ERICH1	chr8	659200	736224
ERICH1_chr8_659200_736224	0/0	a0005	435	3	3	0	0	0	0	copy fasta	ERICH1	chr8	659200	736224
ERICH1_chr8_659200_736224	0/0	a0006	443	2	0	0	2	0	0	copy fasta	ERICH1	chr8	659200	736224
ERICH1_chr8_659200_736224	0/0	a0007	443	1	0	0	0	1	0	copy fasta	ERICH1	chr8	659200	736224
ERICH1_chr8_659200_736224	0/0	a0008	443	1	0	1	0	0	0	copy fasta	ERICH1	chr8	659200	736224
ERICH1_chr8_659200_736224	0/0	a0009	347	1	1	0	0	0	0	copy fasta	ERICH1	chr8	659200	736224
ERICH1_chr8_659200_736224	0/0	a0010	443	1	0	0	1	0	0	copy fasta	ERICH1	chr8	659200	736224
ERICH1_chr8_659200_736224	0/0	a0011	443	1	1	0	0	0	0	copy fasta	ERICH1	chr8	659200	736224
ERICH1_chr8_659200_736224	0/0	a0012	443	1	0	1	0	0	0	copy fasta	ERICH1	chr8	659200	736224
ERICH2_chr2_170765378_170803977	0/1	a0001	436	337	66	59	161	17	33	copy fasta	ERICH2	chr2	170765378	170803977
ERICH2_chr2_170765378_170803977	0/0	a0002	436	18	0	2	11	1	4	copy fasta	ERICH2	chr2	170765378	170803977
ERICH2_chr2_170765378_170803977	1/0	a0003	436	13	12	0	0	0	0	copy fasta	ERICH2	chr2	170765378	170803977
ERICH2_chr2_170765378_170803977	0/0	a0004	436	8	6	2	0	0	0	copy fasta	ERICH2	chr2	170765378	170803977
ERICH2_chr2_170765378_170803977	0/0	a0005	438	6	6	0	0	0	0	copy fasta	ERICH2	chr2	170765378	170803977
ERICH2_chr2_170765378_170803977	0/0	a0006	438	3	0	1	0	0	2	copy fasta	ERICH2	chr2	170765378	170803977
ERICH2_chr2_170765378_170803977	0/0	a0007	436	1	1	0	0	0	0	copy fasta	ERICH2	chr2	170765378	170803977
ERICH2_chr2_170765378_170803977	0/0	a0008	440	1	0	0	0	0	1	copy fasta	ERICH2	chr2	170765378	170803977
ERICH2_chr2_170765378_170803977	0/0	a0009	436	1	0	1	0	0	0	copy fasta	ERICH2	chr2	170765378	170803977
ERICH2_chr2_170765378_170803977	0/0	a0010	436	1	0	1	0	0	0	copy fasta	ERICH2	chr2	170765378	170803977
ERICH2_chr2_170765378_170803977	0/0	a0011	436	1	1	0	0	0	0	copy fasta	ERICH2	chr2	170765378	170803977
ERICH3_chr1_74563123_74678792	0/0	a0001	1530	72	10	16	34	2	10	copy fasta	ERICH3	chr1	74563123	74678792
ERICH3_chr1_74563123_74678792	0/0	a0002	1530	68	18	19	17	3	11	copy fasta	ERICH3	chr1	74563123	74678792
ERICH3_chr1_74563123_74678792	0/1	a0003	1529	51	7	10	27	3	3	copy fasta	ERICH3	chr1	74563123	74678792
ERICH3_chr1_74563123_74678792	0/0	a0004	1530	27	17	3	6	0	1	copy fasta	ERICH3	chr1	74563123	74678792
ERICH3_chr1_74563123_74678792	0/0	a0005	1530	22	9	3	7	0	3	copy fasta	ERICH3	chr1	74563123	74678792
ERICH3_chr1_74563123_74678792	0/0	a0006	1530	8	8	0	0	0	0	copy fasta	ERICH3	chr1	74563123	74678792
ERICH3_chr1_74563123_74678792	0/0	a0007	1530	4	3	1	0	0	0	copy fasta	ERICH3	chr1	74563123	74678792
ERICH3_chr1_74563123_74678792	0/0	a0008	1530	4	4	0	0	0	0	copy fasta	ERICH3	chr1	74563123	74678792
ERICH3_chr1_74563123_74678792	0/0	a0009	1530	3	3	0	0	0	0	copy fasta	ERICH3	chr1	74563123	74678792
ERICH3_chr1_74563123_74678792	0/0	a0010	1530	3	3	0	0	0	0	copy fasta	ERICH3	chr1	74563123	74678792
ERICH3_chr1_74563123_74678792	0/0	a0011	1530	2	0	2	0	0	0	copy fasta	ERICH3	chr1	74563123	74678792