JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ERICH3_chr1_74563123_74678792	0/0	a0012	1530	2	1	1	0	0	0	copy fasta	ERICH3	chr1	74563123	74678792
ERICH3_chr1_74563123_74678792	0/0	a0013	1530	2	0	0	2	0	0	copy fasta	ERICH3	chr1	74563123	74678792
ERICH3_chr1_74563123_74678792	0/0	a0014	1530	2	0	0	2	0	0	copy fasta	ERICH3	chr1	74563123	74678792
ERICH3_chr1_74563123_74678792	0/0	a0015	1529	2	0	2	0	0	0	copy fasta	ERICH3	chr1	74563123	74678792
ERICH3_chr1_74563123_74678792	0/0	a0016	1530	2	0	0	2	0	0	copy fasta	ERICH3	chr1	74563123	74678792
ERICH3_chr1_74563123_74678792	0/0	a0017	1530	1	0	1	0	0	0	copy fasta	ERICH3	chr1	74563123	74678792
ERICH3_chr1_74563123_74678792	0/0	a0018	1530	1	1	0	0	0	0	copy fasta	ERICH3	chr1	74563123	74678792
ERICH3_chr1_74563123_74678792	0/0	a0019	1530	1	0	1	0	0	0	copy fasta	ERICH3	chr1	74563123	74678792
ERICH3_chr1_74563123_74678792	0/0	a0020	1529	1	0	1	0	0	0	copy fasta	ERICH3	chr1	74563123	74678792
ERICH3_chr1_74563123_74678792	0/0	a0021	1530	1	0	0	0	0	1	copy fasta	ERICH3	chr1	74563123	74678792
ERICH3_chr1_74563123_74678792	0/0	a0022	1530	1	1	0	0	0	0	copy fasta	ERICH3	chr1	74563123	74678792
ERICH3_chr1_74563123_74678792	0/0	a0023	1530	1	1	0	0	0	0	copy fasta	ERICH3	chr1	74563123	74678792
ERICH3_chr1_74563123_74678792	0/0	a0024	1530	1	0	0	1	0	0	copy fasta	ERICH3	chr1	74563123	74678792
ERICH3_chr1_74563123_74678792	0/0	a0025	1530	1	1	0	0	0	0	copy fasta	ERICH3	chr1	74563123	74678792
ERICH3_chr1_74563123_74678792	1/0	a0026	1530	1	0	0	0	0	0	copy fasta	ERICH3	chr1	74563123	74678792
ERICH3_chr1_74563123_74678792	0/0	a0027	1530	1	1	0	0	0	0	copy fasta	ERICH3	chr1	74563123	74678792
ERICH3_chr1_74563123_74678792	0/0	a0028	1165	1	0	0	0	0	1	copy fasta	ERICH3	chr1	74563123	74678792
ERICH3_chr1_74563123_74678792	0/0	a0029	1530	1	0	0	1	0	0	copy fasta	ERICH3	chr1	74563123	74678792
ERICH3_chr1_74563123_74678792	0/0	a0030	1529	1	0	0	1	0	0	copy fasta	ERICH3	chr1	74563123	74678792
ERICH3_chr1_74563123_74678792	0/0	a0031	1530	1	1	0	0	0	0	copy fasta	ERICH3	chr1	74563123	74678792
ERICH3_chr1_74563123_74678792	0/0	a0032	1530	1	1	0	0	0	0	copy fasta	ERICH3	chr1	74563123	74678792
ERICH4_chr19_41438156_41449765	1/1	a0001	130	407	82	62	199	16	46	copy fasta	ERICH4	chr19	41438156	41449765
ERICH4_chr19_41438156_41449765	0/0	a0002	130	11	11	0	0	0	0	copy fasta	ERICH4	chr19	41438156	41449765
ERICH4_chr19_41438156_41449765	0/0	a0003	130	3	3	0	0	0	0	copy fasta	ERICH4	chr19	41438156	41449765
ERICH4_chr19_41438156_41449765	0/0	a0004	130	1	0	0	1	0	0	copy fasta	ERICH4	chr19	41438156	41449765
ERICH5_chr8_98059568_98098609	1/1	a0001	374	409	78	70	197	15	47	copy fasta	ERICH5	chr8	98059568	98098609
ERICH5_chr8_98059568_98098609	0/0	a0002	374	8	7	1	0	0	0	copy fasta	ERICH5	chr8	98059568	98098609
ERICH5_chr8_98059568_98098609	0/0	a0003	374	8	8	0	0	0	0	copy fasta	ERICH5	chr8	98059568	98098609
ERICH5_chr8_98059568_98098609	0/0	a0004	374	4	0	0	4	0	0	copy fasta	ERICH5	chr8	98059568	98098609
ERICH5_chr8_98059568_98098609	0/0	a0005	374	4	0	2	0	2	0	copy fasta	ERICH5	chr8	98059568	98098609
ERICH5_chr8_98059568_98098609	0/0	a0006	374	2	0	0	1	0	1	copy fasta	ERICH5	chr8	98059568	98098609
ERICH5_chr8_98059568_98098609	0/0	a0007	374	1	0	0	1	0	0	copy fasta	ERICH5	chr8	98059568	98098609
ERICH5_chr8_98059568_98098609	0/0	a0008	374	1	0	1	0	0	0	copy fasta	ERICH5	chr8	98059568	98098609
ERICH5_chr8_98059568_98098609	0/0	a0009	374	1	0	0	1	0	0	copy fasta	ERICH5	chr8	98059568	98098609
ERICH5_chr8_98059568_98098609	0/0	a0010	245	1	0	1	0	0	0	copy fasta	ERICH5	chr8	98059568	98098609
ERICH5_chr8_98059568_98098609	0/0	a0011	348	1	0	1	0	0	0	copy fasta	ERICH5	chr8	98059568	98098609
ERICH5_chr8_98059568_98098609	0/0	a0012	374	1	1	0	0	0	0	copy fasta	ERICH5	chr8	98059568	98098609
ERICH5_chr8_98059568_98098609	0/0	a0013	374	1	0	0	0	1	0	copy fasta	ERICH5	chr8	98059568	98098609
ERICH6B_chr13_45536294_45620739	0/0	a0001	696	81	4	11	47	4	15	copy fasta	ERICH6B	chr13	45536294	45620739
ERICH6B_chr13_45536294_45620739	0/1	a0002	690	59	13	21	17	2	5	copy fasta	ERICH6B	chr13	45536294	45620739
ERICH6B_chr13_45536294_45620739	1/0	a0003	696	40	15	4	11	2	7	copy fasta	ERICH6B	chr13	45536294	45620739
ERICH6B_chr13_45536294_45620739	0/0	a0004	696	33	6	2	19	0	6	copy fasta	ERICH6B	chr13	45536294	45620739
ERICH6B_chr13_45536294_45620739	0/0	a0005	696	18	4	1	13	0	0	copy fasta	ERICH6B	chr13	45536294	45620739
ERICH6B_chr13_45536294_45620739	0/0	a0006	696	15	9	5	0	0	1	copy fasta	ERICH6B	chr13	45536294	45620739
ERICH6B_chr13_45536294_45620739	0/0	a0007	696	13	12	1	0	0	0	copy fasta	ERICH6B	chr13	45536294	45620739
ERICH6B_chr13_45536294_45620739	0/0	a0008	696	13	0	2	11	0	0	copy fasta	ERICH6B	chr13	45536294	45620739
ERICH6B_chr13_45536294_45620739	0/0	a0009	690	8	0	3	3	1	1	copy fasta	ERICH6B	chr13	45536294	45620739
ERICH6B_chr13_45536294_45620739	0/0	a0010	696	6	3	0	3	0	0	copy fasta	ERICH6B	chr13	45536294	45620739
ERICH6B_chr13_45536294_45620739	0/0	a0011	696	4	4	0	0	0	0	copy fasta	ERICH6B	chr13	45536294	45620739
ERICH6B_chr13_45536294_45620739	0/0	a0012	696	3	3	0	0	0	0	copy fasta	ERICH6B	chr13	45536294	45620739