Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
AFAP1L2_chr10_114289824_114409502	0/0	a0009	818	1	0	0	0	0	1	copy fasta	AFAP1L2	chr10	114289824	114409502
AFAP1L2_chr10_114289824_114409502	0/0	a0010	818	1	1	0	0	0	0	copy fasta	AFAP1L2	chr10	114289824	114409502
AFAP1L2_chr10_114289824_114409502	0/0	a0011	818	1	1	0	0	0	0	copy fasta	AFAP1L2	chr10	114289824	114409502
AFAP1L2_chr10_114289824_114409502	0/0	a0012	818	1	1	0	0	0	0	copy fasta	AFAP1L2	chr10	114289824	114409502
AFAP1L2_chr10_114289824_114409502	0/0	a0013	818	1	0	0	0	0	1	copy fasta	AFAP1L2	chr10	114289824	114409502
AFAP1_chr4_7753714_7944861	1/1	a0001	814	256	61	43	106	8	36	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	a0002	814	35	16	14	0	2	3	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	a0003	814	20	2	6	9	2	1	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	a0004	814	2	0	0	0	0	2	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	a0005	814	2	2	0	0	0	0	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	a0006	814	1	1	0	0	0	0	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	a0007	814	1	0	1	0	0	0	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	a0008	814	1	0	0	1	0	0	copy fasta	AFAP1	chr4	7753714	7944861
AFDN_chr6_167821911_167977023	1/1	a0001	1831	298	83	54	119	12	28	copy fasta	AFDN	chr6	167821911	167977023
AFDN_chr6_167821911_167977023	0/0	a0002	1384	9	1	2	5	0	1	copy fasta	AFDN	chr6	167821911	167977023
AFDN_chr6_167821911_167977023	0/0	a0003	1831	3	0	3	0	0	0	copy fasta	AFDN	chr6	167821911	167977023
AFDN_chr6_167821911_167977023	0/0	a0004	1831	3	0	1	0	0	2	copy fasta	AFDN	chr6	167821911	167977023
AFDN_chr6_167821911_167977023	0/0	a0005	1831	3	0	3	0	0	0	copy fasta	AFDN	chr6	167821911	167977023
AFDN_chr6_167821911_167977023	0/0	a0006	1831	1	0	0	1	0	0	copy fasta	AFDN	chr6	167821911	167977023
AFDN_chr6_167821911_167977023	0/0	a0007	1831	1	1	0	0	0	0	copy fasta	AFDN	chr6	167821911	167977023
AFDN_chr6_167821911_167977023	0/0	a0008	1831	1	0	1	0	0	0	copy fasta	AFDN	chr6	167821911	167977023
AFDN_chr6_167821911_167977023	0/0	a0009	1831	1	1	0	0	0	0	copy fasta	AFDN	chr6	167821911	167977023
AFDN_chr6_167821911_167977023	0/0	a0010	1831	1	0	0	1	0	0	copy fasta	AFDN	chr6	167821911	167977023
AFDN_chr6_167821911_167977023	0/0	a0011	1812	1	0	0	1	0	0	copy fasta	AFDN	chr6	167821911	167977023
AFDN_chr6_167821911_167977023	0/0	a0012	1831	1	1	0	0	0	0	copy fasta	AFDN	chr6	167821911	167977023
AFDN_chr6_167821911_167977023	0/0	a0013	1831	1	1	0	0	0	0	copy fasta	AFDN	chr6	167821911	167977023
AFDN_chr6_167821911_167977023	0/0	a0014	1831	1	0	0	1	0	0	copy fasta	AFDN	chr6	167821911	167977023
AFDN_chr6_167821911_167977023	0/0	a0015	1831	1	0	0	0	0	1	copy fasta	AFDN	chr6	167821911	167977023
AFF1_chr4_86930011_87146039	1/1	a0001	1218	273	84	47	97	14	29	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	a0002	1218	3	3	0	0	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	a0003	1218	2	0	0	2	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	a0004	1218	2	0	0	2	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	a0005	1218	1	1	0	0	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	a0006	1218	1	0	0	1	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	a0007	1218	1	1	0	0	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	a0008	1218	1	0	0	1	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	a0009	1218	1	0	0	1	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	a0010	1218	1	1	0	0	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	a0011	1218	1	1	0	0	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	a0012	1218	1	0	0	1	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	a0013	1218	1	0	1	0	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	a0014	1218	1	0	0	1	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	a0015	1218	1	0	0	0	0	1	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	a0016	1218	1	1	0	0	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	a0017	1218	1	1	0	0	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	a0018	1218	1	1	0	0	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF2_chrX_148495617_149005663	1/1	a0001	1311	166	60	23	61	5	15	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	a0002	1311	1	0	1	0	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	a0003	346	1	0	0	1	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	a0004	1311	1	0	0	1	0	0	copy fasta	AFF2	chrX	148495617	149005663