JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ERICH6B_chr13_45536294_45620739	0/0	a0013	696	3	2	0	1	0	0	copy fasta	ERICH6B	chr13	45536294	45620739
ERICH6B_chr13_45536294_45620739	0/0	a0014	696	3	1	2	0	0	0	copy fasta	ERICH6B	chr13	45536294	45620739
ERICH6B_chr13_45536294_45620739	0/0	a0015	696	3	3	0	0	0	0	copy fasta	ERICH6B	chr13	45536294	45620739
ERICH6B_chr13_45536294_45620739	0/0	a0016	690	3	0	0	2	0	1	copy fasta	ERICH6B	chr13	45536294	45620739
ERICH6B_chr13_45536294_45620739	0/0	a0017	696	2	2	0	0	0	0	copy fasta	ERICH6B	chr13	45536294	45620739
ERICH6B_chr13_45536294_45620739	0/0	a0018	696	2	2	0	0	0	0	copy fasta	ERICH6B	chr13	45536294	45620739
ERICH6B_chr13_45536294_45620739	0/0	a0019	696	2	1	0	1	0	0	copy fasta	ERICH6B	chr13	45536294	45620739
ERICH6B_chr13_45536294_45620739	0/0	a0020	690	2	2	0	0	0	0	copy fasta	ERICH6B	chr13	45536294	45620739
ERICH6B_chr13_45536294_45620739	0/0	a0021	684	2	0	0	2	0	0	copy fasta	ERICH6B	chr13	45536294	45620739
ERICH6B_chr13_45536294_45620739	0/0	a0022	696	1	0	1	0	0	0	copy fasta	ERICH6B	chr13	45536294	45620739
ERICH6B_chr13_45536294_45620739	0/0	a0023	696	1	1	0	0	0	0	copy fasta	ERICH6B	chr13	45536294	45620739
ERICH6B_chr13_45536294_45620739	0/0	a0024	696	1	0	0	0	0	1	copy fasta	ERICH6B	chr13	45536294	45620739
ERICH6B_chr13_45536294_45620739	0/0	a0025	696	1	1	0	0	0	0	copy fasta	ERICH6B	chr13	45536294	45620739
ERICH6B_chr13_45536294_45620739	0/0	a0026	696	1	1	0	0	0	0	copy fasta	ERICH6B	chr13	45536294	45620739
ERICH6B_chr13_45536294_45620739	0/0	a0027	696	1	1	0	0	0	0	copy fasta	ERICH6B	chr13	45536294	45620739
ERICH6B_chr13_45536294_45620739	0/0	a0028	696	1	0	1	0	0	0	copy fasta	ERICH6B	chr13	45536294	45620739
ERICH6B_chr13_45536294_45620739	0/0	a0029	696	1	0	0	0	0	1	copy fasta	ERICH6B	chr13	45536294	45620739
ERICH6B_chr13_45536294_45620739	0/0	a0030	690	1	1	0	0	0	0	copy fasta	ERICH6B	chr13	45536294	45620739
ERICH6B_chr13_45536294_45620739	0/0	a0031	690	1	1	0	0	0	0	copy fasta	ERICH6B	chr13	45536294	45620739
ERICH6B_chr13_45536294_45620739	0/0	a0032	690	1	0	0	0	1	0	copy fasta	ERICH6B	chr13	45536294	45620739
ERICH6_chr3_150654885_150708920	1/1	a0001	663	125	23	24	54	9	13	copy fasta	ERICH6	chr3	150654885	150708920
ERICH6_chr3_150654885_150708920	0/0	a0002	670	100	10	23	55	1	11	copy fasta	ERICH6	chr3	150654885	150708920
ERICH6_chr3_150654885_150708920	0/0	a0003	663	37	12	6	8	1	10	copy fasta	ERICH6	chr3	150654885	150708920
ERICH6_chr3_150654885_150708920	0/0	a0004	670	17	9	1	7	0	0	copy fasta	ERICH6	chr3	150654885	150708920
ERICH6_chr3_150654885_150708920	0/0	a0005	663	7	0	0	7	0	0	copy fasta	ERICH6	chr3	150654885	150708920
ERICH6_chr3_150654885_150708920	0/0	a0006	665	7	3	0	0	0	4	copy fasta	ERICH6	chr3	150654885	150708920
ERICH6_chr3_150654885_150708920	0/0	a0007	677	6	1	4	0	1	0	copy fasta	ERICH6	chr3	150654885	150708920
ERICH6_chr3_150654885_150708920	0/0	a0008	663	6	6	0	0	0	0	copy fasta	ERICH6	chr3	150654885	150708920
ERICH6_chr3_150654885_150708920	0/0	a0009	666	5	5	0	0	0	0	copy fasta	ERICH6	chr3	150654885	150708920
ERICH6_chr3_150654885_150708920	0/0	a0010	666	5	5	0	0	0	0	copy fasta	ERICH6	chr3	150654885	150708920
ERICH6_chr3_150654885_150708920	0/0	a0011	666	4	3	1	0	0	0	copy fasta	ERICH6	chr3	150654885	150708920
ERICH6_chr3_150654885_150708920	0/0	a0012	670	2	1	1	0	0	0	copy fasta	ERICH6	chr3	150654885	150708920
ERICH6_chr3_150654885_150708920	0/0	a0013	670	2	2	0	0	0	0	copy fasta	ERICH6	chr3	150654885	150708920
ERICH6_chr3_150654885_150708920	0/0	a0014	670	2	0	1	0	0	1	copy fasta	ERICH6	chr3	150654885	150708920
ERICH6_chr3_150654885_150708920	0/0	a0015	663	2	2	0	0	0	0	copy fasta	ERICH6	chr3	150654885	150708920
ERICH6_chr3_150654885_150708920	0/0	a0016	666	2	2	0	0	0	0	copy fasta	ERICH6	chr3	150654885	150708920
ERICH6_chr3_150654885_150708920	0/0	a0017	671	1	0	0	1	0	0	copy fasta	ERICH6	chr3	150654885	150708920
ERICH6_chr3_150654885_150708920	0/0	a0018	672	1	1	0	0	0	0	copy fasta	ERICH6	chr3	150654885	150708920
ERICH6_chr3_150654885_150708920	0/0	a0019	670	1	1	0	0	0	0	copy fasta	ERICH6	chr3	150654885	150708920
ERICH6_chr3_150654885_150708920	0/0	a0020	670	1	0	1	0	0	0	copy fasta	ERICH6	chr3	150654885	150708920
ERICH6_chr3_150654885_150708920	0/0	a0021	670	1	0	0	0	0	1	copy fasta	ERICH6	chr3	150654885	150708920
ERICH6_chr3_150654885_150708920	0/0	a0022	670	1	1	0	0	0	0	copy fasta	ERICH6	chr3	150654885	150708920
ERICH6_chr3_150654885_150708920	0/0	a0023	670	1	0	0	0	0	1	copy fasta	ERICH6	chr3	150654885	150708920
ERICH6_chr3_150654885_150708920	0/0	a0024	663	1	0	0	1	0	0	copy fasta	ERICH6	chr3	150654885	150708920
ERICH6_chr3_150654885_150708920	0/0	a0025	663	1	1	0	0	0	0	copy fasta	ERICH6	chr3	150654885	150708920
ERICH6_chr3_150654885_150708920	0/0	a0026	663	1	1	0	0	0	0	copy fasta	ERICH6	chr3	150654885	150708920
ERICH6_chr3_150654885_150708920	0/0	a0027	663	1	0	0	0	0	1	copy fasta	ERICH6	chr3	150654885	150708920
ERICH6_chr3_150654885_150708920	0/0	a0028	663	1	0	0	1	0	0	copy fasta	ERICH6	chr3	150654885	150708920
ERICH6_chr3_150654885_150708920	0/0	a0029	656	1	1	0	0	0	0	copy fasta	ERICH6	chr3	150654885	150708920
ERICH6_chr3_150654885_150708920	0/0	a0030	656	1	1	0	0	0	0	copy fasta	ERICH6	chr3	150654885	150708920