JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ERICH6_chr3_150654885_150708920	0/0	a0031	675	1	0	0	1	0	0	copy fasta	ERICH6	chr3	150654885	150708920
ERICH6_chr3_150654885_150708920	0/0	a0032	669	1	1	0	0	0	0	copy fasta	ERICH6	chr3	150654885	150708920
ERICH6_chr3_150654885_150708920	0/0	a0033	659	1	0	0	1	0	0	copy fasta	ERICH6	chr3	150654885	150708920
ERICH6_chr3_150654885_150708920	0/0	a0034	665	1	1	0	0	0	0	copy fasta	ERICH6	chr3	150654885	150708920
ERICH6_chr3_150654885_150708920	0/0	a0035	665	1	1	0	0	0	0	copy fasta	ERICH6	chr3	150654885	150708920
ERLEC1_chr2_53782044_53823796	1/1	a0001	483	316	83	51	133	12	35	copy fasta	ERLEC1	chr2	53782044	53823796
ERLEC1_chr2_53782044_53823796	0/0	a0002	483	53	7	10	31	2	3	copy fasta	ERLEC1	chr2	53782044	53823796
ERLEC1_chr2_53782044_53823796	0/0	a0003	483	3	0	0	3	0	0	copy fasta	ERLEC1	chr2	53782044	53823796
ERLEC1_chr2_53782044_53823796	0/0	a0004	483	1	0	1	0	0	0	copy fasta	ERLEC1	chr2	53782044	53823796
ERLEC1_chr2_53782044_53823796	0/0	a0005	483	1	0	0	1	0	0	copy fasta	ERLEC1	chr2	53782044	53823796
ERLIN1_chr10_100145094_100191029	1/0	a0001	348	346	89	38	174	7	37	copy fasta	ERLIN1	chr10	100145094	100191029
ERLIN1_chr10_100145094_100191029	0/1	a0002	348	40	3	24	10	1	1	copy fasta	ERLIN1	chr10	100145094	100191029
ERLIN2_chr8_37731634_37763422	0/0	a0001	339	224	68	56	74	6	20	copy fasta	ERLIN2	chr8	37731634	37763422
ERMAP_chr1_42812122_42849991	1/1	a0001	475	319	79	46	151	8	33	copy fasta	ERMAP	chr1	42812122	42849991
ERMAP_chr1_42812122_42849991	0/0	a0002	475	39	2	17	1	6	13	copy fasta	ERMAP	chr1	42812122	42849991
ERMAP_chr1_42812122_42849991	0/0	a0003	475	7	0	1	6	0	0	copy fasta	ERMAP	chr1	42812122	42849991
ERMAP_chr1_42812122_42849991	0/0	a0004	475	5	0	0	5	0	0	copy fasta	ERMAP	chr1	42812122	42849991
ERMAP_chr1_42812122_42849991	0/0	a0005	475	4	3	1	0	0	0	copy fasta	ERMAP	chr1	42812122	42849991
ERMAP_chr1_42812122_42849991	0/0	a0006	475	3	2	1	0	0	0	copy fasta	ERMAP	chr1	42812122	42849991
ERMAP_chr1_42812122_42849991	0/0	a0007	475	2	2	0	0	0	0	copy fasta	ERMAP	chr1	42812122	42849991
ERMAP_chr1_42812122_42849991	0/0	a0008	475	2	0	0	2	0	0	copy fasta	ERMAP	chr1	42812122	42849991
ERMAP_chr1_42812122_42849991	0/0	a0009	475	1	0	0	1	0	0	copy fasta	ERMAP	chr1	42812122	42849991
ERMAP_chr1_42812122_42849991	0/0	a0010	475	1	1	0	0	0	0	copy fasta	ERMAP	chr1	42812122	42849991
ERMAP_chr1_42812122_42849991	0/0	a0011	475	1	0	0	1	0	0	copy fasta	ERMAP	chr1	42812122	42849991
ERMAP_chr1_42812122_42849991	0/0	a0012	475	1	0	0	1	0	0	copy fasta	ERMAP	chr1	42812122	42849991
ERMAP_chr1_42812122_42849991	0/0	a0013	475	1	1	0	0	0	0	copy fasta	ERMAP	chr1	42812122	42849991
ERMARD_chr6_169746622_169786600	0/0	a0001	678	219	46	45	88	9	31	copy fasta	ERMARD	chr6	169746622	169786600
ERMARD_chr6_169746622_169786600	0/1	a0002	678	105	27	24	44	4	5	copy fasta	ERMARD	chr6	169746622	169786600
ERMARD_chr6_169746622_169786600	0/0	a0003	678	39	10	4	22	1	2	copy fasta	ERMARD	chr6	169746622	169786600
ERMARD_chr6_169746622_169786600	0/0	a0004	678	4	4	0	0	0	0	copy fasta	ERMARD	chr6	169746622	169786600
ERMARD_chr6_169746622_169786600	0/0	a0005	678	3	3	0	0	0	0	copy fasta	ERMARD	chr6	169746622	169786600
ERMARD_chr6_169746622_169786600	0/0	a0006	678	3	0	0	3	0	0	copy fasta	ERMARD	chr6	169746622	169786600
ERMARD_chr6_169746622_169786600	0/0	a0007	678	1	1	0	0	0	0	copy fasta	ERMARD	chr6	169746622	169786600
ERMARD_chr6_169746622_169786600	0/0	a0008	678	1	1	0	0	0	0	copy fasta	ERMARD	chr6	169746622	169786600
ERMARD_chr6_169746622_169786600	0/0	a0009	678	1	1	0	0	0	0	copy fasta	ERMARD	chr6	169746622	169786600
ERMARD_chr6_169746622_169786600	0/0	a0010	678	1	0	1	0	0	0	copy fasta	ERMARD	chr6	169746622	169786600
ERMARD_chr6_169746622_169786600	0/0	a0011	678	1	0	0	1	0	0	copy fasta	ERMARD	chr6	169746622	169786600
ERMARD_chr6_169746622_169786600	0/0	a0012	678	1	1	0	0	0	0	copy fasta	ERMARD	chr6	169746622	169786600
ERMN_chr2_157313631_157330824	1/1	a0001	284	356	83	78	139	12	42	copy fasta	ERMN	chr2	157313631	157330824
ERMN_chr2_157313631_157330824	0/0	a0002	284	10	10	0	0	0	0	copy fasta	ERMN	chr2	157313631	157330824
ERMN_chr2_157313631_157330824	0/0	a0003	284	1	0	0	1	0	0	copy fasta	ERMN	chr2	157313631	157330824
ERMN_chr2_157313631_157330824	0/0	a0004	284	1	1	0	0	0	0	copy fasta	ERMN	chr2	157313631	157330824
ERMP1_chr9_5779572_5838117	1/0	a0001	904	357	92	61	159	8	36	copy fasta	ERMP1	chr9	5779572	5838117
ERMP1_chr9_5779572_5838117	0/1	a0002	904	6	0	1	0	0	4	copy fasta	ERMP1	chr9	5779572	5838117
ERMP1_chr9_5779572_5838117	0/0	a0003	904	4	0	0	4	0	0	copy fasta	ERMP1	chr9	5779572	5838117
ERMP1_chr9_5779572_5838117	0/0	a0004	904	3	0	0	3	0	0	copy fasta	ERMP1	chr9	5779572	5838117
ERMP1_chr9_5779572_5838117	0/0	a0005	904	2	0	0	2	0	0	copy fasta	ERMP1	chr9	5779572	5838117
ERMP1_chr9_5779572_5838117	0/0	a0006	904	2	2	0	0	0	0	copy fasta	ERMP1	chr9	5779572	5838117
ERMP1_chr9_5779572_5838117	0/0	a0007	904	2	0	2	0	0	0	copy fasta	ERMP1	chr9	5779572	5838117
ERMP1_chr9_5779572_5838117	0/0	a0008	904	1	0	0	1	0	0	copy fasta	ERMP1	chr9	5779572	5838117