JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ERMP1_chr9_5779572_5838117	0/0	a0009	904	1	0	0	1	0	0	copy fasta	ERMP1	chr9	5779572	5838117
ERN1_chr17_64034142_64135144	1/1	a0001	977	216	81	49	55	9	20	copy fasta	ERN1	chr17	64034142	64135144
ERN1_chr17_64034142_64135144	0/0	a0002	977	4	0	4	0	0	0	copy fasta	ERN1	chr17	64034142	64135144
ERN1_chr17_64034142_64135144	0/0	a0003	977	2	2	0	0	0	0	copy fasta	ERN1	chr17	64034142	64135144
ERN1_chr17_64034142_64135144	0/0	a0004	977	2	2	0	0	0	0	copy fasta	ERN1	chr17	64034142	64135144
ERN1_chr17_64034142_64135144	0/0	a0005	978	2	2	0	0	0	0	copy fasta	ERN1	chr17	64034142	64135144
ERN1_chr17_64034142_64135144	0/0	a0006	977	2	0	1	0	1	0	copy fasta	ERN1	chr17	64034142	64135144
ERN1_chr17_64034142_64135144	0/0	a0007	977	2	2	0	0	0	0	copy fasta	ERN1	chr17	64034142	64135144
ERN1_chr17_64034142_64135144	0/0	a0008	977	1	1	0	0	0	0	copy fasta	ERN1	chr17	64034142	64135144
ERN1_chr17_64034142_64135144	0/0	a0009	977	1	0	1	0	0	0	copy fasta	ERN1	chr17	64034142	64135144
ERN1_chr17_64034142_64135144	0/0	a0010	977	1	0	0	1	0	0	copy fasta	ERN1	chr17	64034142	64135144
ERN1_chr17_64034142_64135144	0/0	a0011	977	1	0	1	0	0	0	copy fasta	ERN1	chr17	64034142	64135144
ERN2_chr16_23685310_23718222	1/1	a0001	926	217	24	48	109	6	28	copy fasta	ERN2	chr16	23685310	23718222
ERN2_chr16_23685310_23718222	0/0	a0002	926	174	52	26	75	5	16	copy fasta	ERN2	chr16	23685310	23718222
ERN2_chr16_23685310_23718222	0/0	a0003	926	7	7	0	0	0	0	copy fasta	ERN2	chr16	23685310	23718222
ERN2_chr16_23685310_23718222	0/0	a0004	926	3	3	0	0	0	0	copy fasta	ERN2	chr16	23685310	23718222
ERN2_chr16_23685310_23718222	0/0	a0005	463	2	0	2	0	0	0	copy fasta	ERN2	chr16	23685310	23718222
ERN2_chr16_23685310_23718222	0/0	a0006	926	1	0	0	1	0	0	copy fasta	ERN2	chr16	23685310	23718222
ERN2_chr16_23685310_23718222	0/0	a0007	926	1	0	0	1	0	0	copy fasta	ERN2	chr16	23685310	23718222
ERN2_chr16_23685310_23718222	0/0	a0008	926	1	0	0	1	0	0	copy fasta	ERN2	chr16	23685310	23718222
ERN2_chr16_23685310_23718222	0/0	a0009	926	1	0	0	1	0	0	copy fasta	ERN2	chr16	23685310	23718222
ERN2_chr16_23685310_23718222	0/0	a0010	926	1	0	0	0	0	1	copy fasta	ERN2	chr16	23685310	23718222
ERN2_chr16_23685310_23718222	0/0	a0011	926	1	0	0	1	0	0	copy fasta	ERN2	chr16	23685310	23718222
ERN2_chr16_23685310_23718222	0/0	a0012	926	1	0	0	1	0	0	copy fasta	ERN2	chr16	23685310	23718222
ERN2_chr16_23685310_23718222	0/0	a0013	926	1	0	0	0	1	0	copy fasta	ERN2	chr16	23685310	23718222
ERN2_chr16_23685310_23718222	0/0	a0014	926	1	0	0	0	0	1	copy fasta	ERN2	chr16	23685310	23718222
ERO1A_chr14_52634915_52700558	1/1	a0001	468	396	95	62	183	16	38	copy fasta	ERO1A	chr14	52634915	52700558
ERO1A_chr14_52634915_52700558	0/0	a0002	468	1	0	0	1	0	0	copy fasta	ERO1A	chr14	52634915	52700558
ERO1A_chr14_52634915_52700558	0/0	a0003	468	1	1	0	0	0	0	copy fasta	ERO1A	chr14	52634915	52700558
ERO1B_chr1_236210101_236286958	0/0	a0001	467	249	47	43	138	3	18	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	0/1	a0002	467	82	2	23	25	8	23	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	1/0	a0003	467	46	38	6	1	0	0	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	0/0	a0004	467	13	4	1	6	0	2	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	0/0	a0005	467	2	2	0	0	0	0	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	0/0	a0006	467	1	0	0	0	0	1	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	0/0	a0007	467	1	1	0	0	0	0	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	0/0	a0008	467	1	0	0	0	1	0	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	0/0	a0009	467	1	0	1	0	0	0	copy fasta	ERO1B	chr1	236210101	236286958
ERP27_chr12_14909039_14943537	1/1	a0001	273	383	91	78	155	16	41	copy fasta	ERP27	chr12	14909039	14943537
ERP27_chr12_14909039_14943537	0/0	a0002	273	15	0	0	10	0	5	copy fasta	ERP27	chr12	14909039	14943537
ERP27_chr12_14909039_14943537	0/0	a0003	273	3	3	0	0	0	0	copy fasta	ERP27	chr12	14909039	14943537
ERP27_chr12_14909039_14943537	0/0	a0004	273	1	0	0	1	0	0	copy fasta	ERP27	chr12	14909039	14943537
ERP29_chr12_112008426_112028449	1/1	a0001	261	390	92	61	178	10	47	copy fasta	ERP29	chr12	112008426	112028449
ERP29_chr12_112008426_112028449	0/0	a0002	261	6	6	0	0	0	0	copy fasta	ERP29	chr12	112008426	112028449
ERP29_chr12_112008426_112028449	0/0	a0003	261	2	0	1	0	0	1	copy fasta	ERP29	chr12	112008426	112028449
ERP44_chr9_99974185_100104000	1/1	a0001	406	218	71	54	57	12	22	copy fasta	ERP44	chr9	99974185	100104000
ERP44_chr9_99974185_100104000	0/0	a0002	406	1	0	0	1	0	0	copy fasta	ERP44	chr9	99974185	100104000
ERP44_chr9_99974185_100104000	0/0	a0003	406	1	1	0	0	0	0	copy fasta	ERP44	chr9	99974185	100104000
ERRFI1_chr1_8006727_8031309	1/1	a0001	462	392	83	67	192	16	32	copy fasta	ERRFI1	chr1	8006727	8031309
ERRFI1_chr1_8006727_8031309	0/0	a0002	462	5	4	1	0	0	0	copy fasta	ERRFI1	chr1	8006727	8031309