JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ERRFI1_chr1_8006727_8031309	0/0	a0003	462	2	2	0	0	0	0	copy fasta	ERRFI1	chr1	8006727	8031309
ERRFI1_chr1_8006727_8031309	0/0	a0004	462	1	1	0	0	0	0	copy fasta	ERRFI1	chr1	8006727	8031309
ERRFI1_chr1_8006727_8031309	0/0	a0005	462	1	1	0	0	0	0	copy fasta	ERRFI1	chr1	8006727	8031309
ERRFI1_chr1_8006727_8031309	0/0	a0006	462	1	1	0	0	0	0	copy fasta	ERRFI1	chr1	8006727	8031309
ERV3-1_chr7_64985356_65011687	0/0	a0001	604	186	47	19	89	9	22	copy fasta	ERV3-1	chr7	64985356	65011687
ERV3-1_chr7_64985356_65011687	0/1	a0002	604	132	16	40	54	6	15	copy fasta	ERV3-1	chr7	64985356	65011687
ERV3-1_chr7_64985356_65011687	0/0	a0003	222	62	1	8	46	2	5	copy fasta	ERV3-1	chr7	64985356	65011687
ERV3-1_chr7_64985356_65011687	1/0	a0004	604	58	22	7	28	0	0	copy fasta	ERV3-1	chr7	64985356	65011687
ERV3-1_chr7_64985356_65011687	0/0	a0005	604	7	5	2	0	0	0	copy fasta	ERV3-1	chr7	64985356	65011687
ERV3-1_chr7_64985356_65011687	0/0	a0006	604	4	4	0	0	0	0	copy fasta	ERV3-1	chr7	64985356	65011687
ERV3-1_chr7_64985356_65011687	0/0	a0007	604	3	0	0	0	1	2	copy fasta	ERV3-1	chr7	64985356	65011687
ERV3-1_chr7_64985356_65011687	0/0	a0008	604	1	1	0	0	0	0	copy fasta	ERV3-1	chr7	64985356	65011687
ERV3-1_chr7_64985356_65011687	0/0	a0009	604	1	0	0	0	0	1	copy fasta	ERV3-1	chr7	64985356	65011687
ERV3-1_chr7_64985356_65011687	0/0	a0010	604	1	0	1	0	0	0	copy fasta	ERV3-1	chr7	64985356	65011687
ERV3-1_chr7_64985356_65011687	0/0	a0011	604	1	0	0	1	0	0	copy fasta	ERV3-1	chr7	64985356	65011687
ERV3-1_chr7_64985356_65011687	0/0	a0012	604	1	0	0	0	0	1	copy fasta	ERV3-1	chr7	64985356	65011687
ERV3-1_chr7_64985356_65011687	0/0	a0013	222	1	0	1	0	0	0	copy fasta	ERV3-1	chr7	64985356	65011687
ERVFRD-1_chr6_11097489_11116725	1/1	a0001	538	412	91	69	186	18	46	copy fasta	ERVFRD-1	chr6	11097489	11116725
ERVFRD-1_chr6_11097489_11116725	0/0	a0002	538	8	0	0	8	0	0	copy fasta	ERVFRD-1	chr6	11097489	11116725
ERVFRD-1_chr6_11097489_11116725	0/0	a0003	538	1	1	0	0	0	0	copy fasta	ERVFRD-1	chr6	11097489	11116725
ERVFRD-1_chr6_11097489_11116725	0/0	a0004	538	1	0	0	1	0	0	copy fasta	ERVFRD-1	chr6	11097489	11116725
ERVFRD-1_chr6_11097489_11116725	0/0	a0005	538	1	0	0	1	0	0	copy fasta	ERVFRD-1	chr6	11097489	11116725
ERVFRD-1_chr6_11097489_11116725	0/0	a0006	538	1	0	0	0	0	1	copy fasta	ERVFRD-1	chr6	11097489	11116725
ERVFRD-1_chr6_11097489_11116725	0/0	a0007	538	1	0	1	0	0	0	copy fasta	ERVFRD-1	chr6	11097489	11116725
ERVFRD-1_chr6_11097489_11116725	0/0	a0008	538	1	0	0	0	0	1	copy fasta	ERVFRD-1	chr6	11097489	11116725
ERVH48-1_chr21_42911803_42930630	1/1	a0001	160	377	83	74	163	14	41	copy fasta	ERVH48-1	chr21	42911803	42930630
ERVH48-1_chr21_42911803_42930630	0/0	a0002	160	30	0	2	24	2	2	copy fasta	ERVH48-1	chr21	42911803	42930630
ERVH48-1_chr21_42911803_42930630	0/0	a0003	160	7	0	0	6	0	1	copy fasta	ERVH48-1	chr21	42911803	42930630
ERVH48-1_chr21_42911803_42930630	0/0	a0004	160	5	3	2	0	0	0	copy fasta	ERVH48-1	chr21	42911803	42930630
ERVH48-1_chr21_42911803_42930630	0/0	a0005	160	1	0	0	1	0	0	copy fasta	ERVH48-1	chr21	42911803	42930630
ERVK3-1_chr19_58300377_58321812	1/1	a0001	109	420	94	80	185	16	43	copy fasta	ERVK3-1	chr19	58300377	58321812
ERVK3-1_chr19_58300377_58321812	0/0	a0002	109	2	2	0	0	0	0	copy fasta	ERVK3-1	chr19	58300377	58321812
ERVK3-1_chr19_58300377_58321812	0/0	a0003	109	1	0	0	0	0	1	copy fasta	ERVK3-1	chr19	58300377	58321812
ERVK3-1_chr19_58300377_58321812	0/0	a0004	109	1	0	0	1	0	0	copy fasta	ERVK3-1	chr19	58300377	58321812
ERVMER34-1_chr4_52737553_52756425	1/1	a0001	563	303	50	65	138	10	38	copy fasta	ERVMER34-1	chr4	52737553	52756425
ERVMER34-1_chr4_52737553_52756425	0/0	a0002	563	59	12	14	27	4	2	copy fasta	ERVMER34-1	chr4	52737553	52756425
ERVMER34-1_chr4_52737553_52756425	0/0	a0003	563	21	20	1	0	0	0	copy fasta	ERVMER34-1	chr4	52737553	52756425
ERVMER34-1_chr4_52737553_52756425	0/0	a0004	67	7	7	0	0	0	0	copy fasta	ERVMER34-1	chr4	52737553	52756425
ERVMER34-1_chr4_52737553_52756425	0/0	a0005	563	1	0	0	1	0	0	copy fasta	ERVMER34-1	chr4	52737553	52756425
ERVMER34-1_chr4_52737553_52756425	0/0	a0006	563	1	1	0	0	0	0	copy fasta	ERVMER34-1	chr4	52737553	52756425
ERVV-1_chr19_53008921_53021123	1/1	a0001	477	341	58	73	161	15	32	copy fasta	ERVV-1	chr19	53008921	53021123
ERVV-1_chr19_53008921_53021123	0/0	a0002	477	19	19	0	0	0	0	copy fasta	ERVV-1	chr19	53008921	53021123
ERVV-1_chr19_53008921_53021123	0/0	a0003	477	16	0	2	4	1	9	copy fasta	ERVV-1	chr19	53008921	53021123
ERVV-1_chr19_53008921_53021123	0/0	a0004	477	14	13	1	0	0	0	copy fasta	ERVV-1	chr19	53008921	53021123
ERVV-1_chr19_53008921_53021123	0/0	a0005	477	10	5	1	3	0	1	copy fasta	ERVV-1	chr19	53008921	53021123
ERVV-1_chr19_53008921_53021123	0/0	a0006	477	1	1	0	0	0	0	copy fasta	ERVV-1	chr19	53008921	53021123
ERVV-1_chr19_53008921_53021123	0/0	a0007	477	1	1	0	0	0	0	copy fasta	ERVV-1	chr19	53008921	53021123
ERVV-1_chr19_53008921_53021123	0/0	a0008	477	1	1	0	0	0	0	copy fasta	ERVV-1	chr19	53008921	53021123
ERVV-1_chr19_53008921_53021123	0/0	a0009	477	1	0	1	0	0	0	copy fasta	ERVV-1	chr19	53008921	53021123
ERVV-2_chr19_53039740_53056680	1/1	a0001	535	339	58	59	171	9	40	copy fasta	ERVV-2	chr19	53039740	53056680