JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ERVV-2_chr19_53039740_53056680	0/0	a0002	535	67	37	19	0	7	4	copy fasta	ERVV-2	chr19	53039740	53056680
ERVV-2_chr19_53039740_53056680	0/0	a0003	535	24	0	1	21	0	2	copy fasta	ERVV-2	chr19	53039740	53056680
ERVV-2_chr19_53039740_53056680	0/0	a0004	535	10	1	3	6	0	0	copy fasta	ERVV-2	chr19	53039740	53056680
ERVV-2_chr19_53039740_53056680	0/0	a0005	535	2	0	0	0	0	2	copy fasta	ERVV-2	chr19	53039740	53056680
ERVV-2_chr19_53039740_53056680	0/0	a0006	535	1	1	0	0	0	0	copy fasta	ERVV-2	chr19	53039740	53056680
ERVV-2_chr19_53039740_53056680	0/0	a0007	535	1	1	0	0	0	0	copy fasta	ERVV-2	chr19	53039740	53056680
ERVV-2_chr19_53039740_53056680	0/0	a0008	535	1	1	0	0	0	0	copy fasta	ERVV-2	chr19	53039740	53056680
ERVV-2_chr19_53039740_53056680	0/0	a0009	535	1	1	0	0	0	0	copy fasta	ERVV-2	chr19	53039740	53056680
ERVW-1_chr7_92463380_92482946	1/1	a0001	538	286	53	59	133	9	30	copy fasta	ERVW-1	chr7	92463380	92482946
ERVW-1_chr7_92463380_92482946	0/0	a0002	538	117	27	11	67	5	7	copy fasta	ERVW-1	chr7	92463380	92482946
ERVW-1_chr7_92463380_92482946	0/0	a0003	538	4	0	0	0	0	4	copy fasta	ERVW-1	chr7	92463380	92482946
ERVW-1_chr7_92463380_92482946	0/0	a0004	538	3	0	3	0	0	0	copy fasta	ERVW-1	chr7	92463380	92482946
ERVW-1_chr7_92463380_92482946	0/0	a0005	538	3	3	0	0	0	0	copy fasta	ERVW-1	chr7	92463380	92482946
ERVW-1_chr7_92463380_92482946	0/0	a0006	538	2	0	1	0	0	1	copy fasta	ERVW-1	chr7	92463380	92482946
ERVW-1_chr7_92463380_92482946	0/0	a0007	538	1	0	1	0	0	0	copy fasta	ERVW-1	chr7	92463380	92482946
ERVW-1_chr7_92463380_92482946	0/0	a0008	538	1	0	1	0	0	0	copy fasta	ERVW-1	chr7	92463380	92482946
ERVW-1_chr7_92463380_92482946	0/0	a0009	538	1	0	1	0	0	0	copy fasta	ERVW-1	chr7	92463380	92482946
ERVW-1_chr7_92463380_92482946	0/0	a0010	538	1	0	1	0	0	0	copy fasta	ERVW-1	chr7	92463380	92482946
ERVW-1_chr7_92463380_92482946	0/0	a0011	538	1	1	0	0	0	0	copy fasta	ERVW-1	chr7	92463380	92482946
ERVW-1_chr7_92463380_92482946	0/0	a0012	538	1	1	0	0	0	0	copy fasta	ERVW-1	chr7	92463380	92482946
ERVW-1_chr7_92463380_92482946	0/0	a0013	538	1	1	0	0	0	0	copy fasta	ERVW-1	chr7	92463380	92482946
ESAM_chr11_124748126_124767290	1/1	a0001	390	406	81	75	189	15	44	copy fasta	ESAM	chr11	124748126	124767290
ESAM_chr11_124748126_124767290	0/0	a0002	390	10	6	1	0	1	2	copy fasta	ESAM	chr11	124748126	124767290
ESAM_chr11_124748126_124767290	0/0	a0003	390	5	5	0	0	0	0	copy fasta	ESAM	chr11	124748126	124767290
ESAM_chr11_124748126_124767290	0/0	a0004	390	3	3	0	0	0	0	copy fasta	ESAM	chr11	124748126	124767290
ESAM_chr11_124748126_124767290	0/0	a0005	390	2	0	2	0	0	0	copy fasta	ESAM	chr11	124748126	124767290
ESAM_chr11_124748126_124767290	0/0	a0006	390	1	0	0	1	0	0	copy fasta	ESAM	chr11	124748126	124767290
ESAM_chr11_124748126_124767290	0/0	a0007	390	1	0	0	1	0	0	copy fasta	ESAM	chr11	124748126	124767290
ESAM_chr11_124748126_124767290	0/0	a0008	390	1	1	0	0	0	0	copy fasta	ESAM	chr11	124748126	124767290
ESAM_chr11_124748126_124767290	0/0	a0009	390	1	0	0	1	0	0	copy fasta	ESAM	chr11	124748126	124767290
ESCO1_chr18_21524284_21605704	0/0	a0001	840	188	62	40	61	5	20	copy fasta	ESCO1	chr18	21524284	21605704
ESCO1_chr18_21524284_21605704	1/0	a0002	840	112	23	18	51	3	16	copy fasta	ESCO1	chr18	21524284	21605704
ESCO1_chr18_21524284_21605704	0/0	a0003	840	3	3	0	0	0	0	copy fasta	ESCO1	chr18	21524284	21605704
ESCO1_chr18_21524284_21605704	0/0	a0004	840	2	0	2	0	0	0	copy fasta	ESCO1	chr18	21524284	21605704
ESCO1_chr18_21524284_21605704	0/0	a0005	840	2	0	0	0	0	2	copy fasta	ESCO1	chr18	21524284	21605704
ESCO1_chr18_21524284_21605704	0/1	a0006	840	1	0	0	0	0	0	copy fasta	ESCO1	chr18	21524284	21605704
ESCO1_chr18_21524284_21605704	0/0	a0007	840	1	1	0	0	0	0	copy fasta	ESCO1	chr18	21524284	21605704
ESCO1_chr18_21524284_21605704	0/0	a0008	840	1	1	0	0	0	0	copy fasta	ESCO1	chr18	21524284	21605704
ESCO2_chr8_27769554_27810316	1/1	a0001	601	279	71	47	112	11	36	copy fasta	ESCO2	chr8	27769554	27810316
ESCO2_chr8_27769554_27810316	0/0	a0002	601	72	12	5	49	1	5	copy fasta	ESCO2	chr8	27769554	27810316
ESCO2_chr8_27769554_27810316	0/0	a0003	601	18	6	0	12	0	0	copy fasta	ESCO2	chr8	27769554	27810316
ESCO2_chr8_27769554_27810316	0/0	a0004	601	2	1	1	0	0	0	copy fasta	ESCO2	chr8	27769554	27810316
ESCO2_chr8_27769554_27810316	0/0	a0005	601	2	2	0	0	0	0	copy fasta	ESCO2	chr8	27769554	27810316
ESCO2_chr8_27769554_27810316	0/0	a0006	601	2	0	1	0	0	1	copy fasta	ESCO2	chr8	27769554	27810316
ESCO2_chr8_27769554_27810316	0/0	a0007	601	1	0	0	0	0	1	copy fasta	ESCO2	chr8	27769554	27810316
ESCO2_chr8_27769554_27810316	0/0	a0008	601	1	0	0	1	0	0	copy fasta	ESCO2	chr8	27769554	27810316
ESCO2_chr8_27769554_27810316	0/0	a0009	601	1	0	0	1	0	0	copy fasta	ESCO2	chr8	27769554	27810316
ESCO2_chr8_27769554_27810316	0/0	a0010	601	1	0	0	1	0	0	copy fasta	ESCO2	chr8	27769554	27810316
ESCO2_chr8_27769554_27810316	0/0	a0011	601	1	0	0	0	0	1	copy fasta	ESCO2	chr8	27769554	27810316
ESD_chr13_46766256_46802161	1/1	a0001	282	317	84	59	127	12	33	copy fasta	ESD	chr13	46766256	46802161