JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ESD_chr13_46766256_46802161	0/0	a0002	282	85	4	13	62	2	4	copy fasta	ESD	chr13	46766256	46802161
ESD_chr13_46766256_46802161	0/0	a0003	282	3	0	0	3	0	0	copy fasta	ESD	chr13	46766256	46802161
ESD_chr13_46766256_46802161	0/0	a0004	282	1	0	0	0	0	1	copy fasta	ESD	chr13	46766256	46802161
ESF1_chr20_13709325_13789919	0/0	a0001	851	288	67	42	133	11	35	copy fasta	ESF1	chr20	13709325	13789919
ESF1_chr20_13709325_13789919	1/0	a0002	851	59	10	13	23	4	8	copy fasta	ESF1	chr20	13709325	13789919
ESF1_chr20_13709325_13789919	0/1	a0003	851	23	2	6	9	1	4	copy fasta	ESF1	chr20	13709325	13789919
ESF1_chr20_13709325_13789919	0/0	a0004	850	10	0	0	10	0	0	copy fasta	ESF1	chr20	13709325	13789919
ESF1_chr20_13709325_13789919	0/0	a0005	851	2	0	0	2	0	0	copy fasta	ESF1	chr20	13709325	13789919
ESF1_chr20_13709325_13789919	0/0	a0006	851	1	1	0	0	0	0	copy fasta	ESF1	chr20	13709325	13789919
ESF1_chr20_13709325_13789919	0/0	a0007	851	1	0	0	0	0	1	copy fasta	ESF1	chr20	13709325	13789919
ESF1_chr20_13709325_13789919	0/0	a0008	851	1	1	0	0	0	0	copy fasta	ESF1	chr20	13709325	13789919
ESF1_chr20_13709325_13789919	0/0	a0009	851	1	0	1	0	0	0	copy fasta	ESF1	chr20	13709325	13789919
ESF1_chr20_13709325_13789919	0/0	a0010	851	1	0	1	0	0	0	copy fasta	ESF1	chr20	13709325	13789919
ESF1_chr20_13709325_13789919	0/0	a0011	851	1	0	1	0	0	0	copy fasta	ESF1	chr20	13709325	13789919
ESF1_chr20_13709325_13789919	0/0	a0012	851	1	1	0	0	0	0	copy fasta	ESF1	chr20	13709325	13789919
ESF1_chr20_13709325_13789919	0/0	a0013	851	1	0	0	1	0	0	copy fasta	ESF1	chr20	13709325	13789919
ESM1_chr5_54972867_54990593	1/1	a0001	184	437	90	77	203	18	47	copy fasta	ESM1	chr5	54972867	54990593
ESM1_chr5_54972867_54990593	0/0	a0002	184	6	5	1	0	0	0	copy fasta	ESM1	chr5	54972867	54990593
ESM1_chr5_54972867_54990593	0/0	a0003	184	1	0	0	0	0	1	copy fasta	ESM1	chr5	54972867	54990593
ESM1_chr5_54972867_54990593	0/0	a0004	184	1	1	0	0	0	0	copy fasta	ESM1	chr5	54972867	54990593
ESM1_chr5_54972867_54990593	0/0	a0005	88	1	0	0	1	0	0	copy fasta	ESM1	chr5	54972867	54990593
ESPL1_chr12_53263299_53298638	0/1	a0001	2120	183	27	34	92	5	24	copy fasta	ESPL1	chr12	53263299	53298638
ESPL1_chr12_53263299_53298638	0/0	a0002	2120	46	4	7	33	0	2	copy fasta	ESPL1	chr12	53263299	53298638
ESPL1_chr12_53263299_53298638	0/0	a0003	2120	20	3	9	0	4	4	copy fasta	ESPL1	chr12	53263299	53298638
ESPL1_chr12_53263299_53298638	0/0	a0004	2120	14	13	1	0	0	0	copy fasta	ESPL1	chr12	53263299	53298638
ESPL1_chr12_53263299_53298638	0/0	a0005	2120	8	2	0	4	0	2	copy fasta	ESPL1	chr12	53263299	53298638
ESPL1_chr12_53263299_53298638	0/0	a0006	2120	8	8	0	0	0	0	copy fasta	ESPL1	chr12	53263299	53298638
ESPL1_chr12_53263299_53298638	0/0	a0007	2120	6	6	0	0	0	0	copy fasta	ESPL1	chr12	53263299	53298638
ESPL1_chr12_53263299_53298638	0/0	a0008	2120	5	5	0	0	0	0	copy fasta	ESPL1	chr12	53263299	53298638
ESPL1_chr12_53263299_53298638	0/0	a0009	2120	4	4	0	0	0	0	copy fasta	ESPL1	chr12	53263299	53298638
ESPL1_chr12_53263299_53298638	0/0	a0010	2120	4	4	0	0	0	0	copy fasta	ESPL1	chr12	53263299	53298638
ESPL1_chr12_53263299_53298638	0/0	a0011	2120	3	0	3	0	0	0	copy fasta	ESPL1	chr12	53263299	53298638
ESPL1_chr12_53263299_53298638	0/0	a0012	2120	3	3	0	0	0	0	copy fasta	ESPL1	chr12	53263299	53298638
ESPL1_chr12_53263299_53298638	0/0	a0013	2120	3	1	2	0	0	0	copy fasta	ESPL1	chr12	53263299	53298638
ESPL1_chr12_53263299_53298638	0/0	a0014	2120	2	2	0	0	0	0	copy fasta	ESPL1	chr12	53263299	53298638
ESPL1_chr12_53263299_53298638	0/0	a0015	2120	2	0	0	0	0	2	copy fasta	ESPL1	chr12	53263299	53298638
ESPL1_chr12_53263299_53298638	0/0	a0016	2120	2	1	1	0	0	0	copy fasta	ESPL1	chr12	53263299	53298638
ESPL1_chr12_53263299_53298638	0/0	a0017	2120	2	2	0	0	0	0	copy fasta	ESPL1	chr12	53263299	53298638
ESPL1_chr12_53263299_53298638	1/0	a0018	2120	1	0	0	0	0	0	copy fasta	ESPL1	chr12	53263299	53298638
ESPL1_chr12_53263299_53298638	0/0	a0019	2120	1	0	1	0	0	0	copy fasta	ESPL1	chr12	53263299	53298638
ESPL1_chr12_53263299_53298638	0/0	a0020	2120	1	0	1	0	0	0	copy fasta	ESPL1	chr12	53263299	53298638
ESPL1_chr12_53263299_53298638	0/0	a0021	2120	1	1	0	0	0	0	copy fasta	ESPL1	chr12	53263299	53298638
ESPL1_chr12_53263299_53298638	0/0	a0022	2120	1	1	0	0	0	0	copy fasta	ESPL1	chr12	53263299	53298638
ESPL1_chr12_53263299_53298638	0/0	a0023	2120	1	0	1	0	0	0	copy fasta	ESPL1	chr12	53263299	53298638
ESPL1_chr12_53263299_53298638	0/0	a0024	2120	1	0	0	0	1	0	copy fasta	ESPL1	chr12	53263299	53298638
ESPL1_chr12_53263299_53298638	0/0	a0025	2120	1	1	0	0	0	0	copy fasta	ESPL1	chr12	53263299	53298638
ESPL1_chr12_53263299_53298638	0/0	a0026	2120	1	0	0	1	0	0	copy fasta	ESPL1	chr12	53263299	53298638
ESPL1_chr12_53263299_53298638	0/0	a0027	2120	1	0	1	0	0	0	copy fasta	ESPL1	chr12	53263299	53298638
ESPL1_chr12_53263299_53298638	0/0	a0028	2120	1	0	0	1	0	0	copy fasta	ESPL1	chr12	53263299	53298638
ESPL1_chr12_53263299_53298638	0/0	a0029	2120	1	1	0	0	0	0	copy fasta	ESPL1	chr12	53263299	53298638