JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ESPL1_chr12_53263299_53298638	0/0	a0030	2120	1	1	0	0	0	0	copy fasta	ESPL1	chr12	53263299	53298638
ESPL1_chr12_53263299_53298638	0/0	a0031	2120	1	1	0	0	0	0	copy fasta	ESPL1	chr12	53263299	53298638
ESPL1_chr12_53263299_53298638	0/0	a0032	2120	1	0	0	1	0	0	copy fasta	ESPL1	chr12	53263299	53298638
ESPL1_chr12_53263299_53298638	0/0	a0033	2120	1	1	0	0	0	0	copy fasta	ESPL1	chr12	53263299	53298638
ESPL1_chr12_53263299_53298638	0/0	a0034	2120	1	1	0	0	0	0	copy fasta	ESPL1	chr12	53263299	53298638
ESPL1_chr12_53263299_53298638	0/0	a0035	2120	1	1	0	0	0	0	copy fasta	ESPL1	chr12	53263299	53298638
ESPL1_chr12_53263299_53298638	0/0	a0036	2120	1	0	1	0	0	0	copy fasta	ESPL1	chr12	53263299	53298638
ESPNL_chr2_238095340_238138287	0/0	a0001	1005	104	16	11	59	5	13	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	a0002	1005	74	8	17	47	1	1	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	a0003	1005	61	11	7	29	2	12	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	1/1	a0004	1005	45	1	23	10	2	7	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	a0005	1005	35	17	6	11	0	1	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	a0006	1005	20	11	6	2	0	1	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	a0007	1005	9	0	5	0	0	4	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	a0008	1005	7	6	0	1	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	a0009	1005	5	0	0	5	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	a0010	1005	3	3	0	0	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	a0011	1005	3	2	1	0	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	a0012	1005	3	0	0	0	1	2	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	a0013	1005	2	2	0	0	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	a0014	1005	2	1	1	0	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	a0015	1005	2	1	1	0	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	a0016	1005	2	0	0	0	1	1	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	a0017	1005	2	0	0	2	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	a0018	1005	1	1	0	0	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	a0019	1005	1	1	0	0	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	a0020	1005	1	1	0	0	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	a0021	1005	1	1	0	0	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	a0022	1005	1	1	0	0	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	a0023	1005	1	0	0	1	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	a0024	1005	1	1	0	0	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	a0025	1005	1	1	0	0	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	a0026	1005	1	1	0	0	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	a0027	1005	1	0	1	0	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	a0028	1005	1	0	0	0	1	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	a0029	1005	1	0	0	0	0	1	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	a0030	1005	1	1	0	0	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	a0031	1005	1	1	0	0	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	a0032	1005	1	0	0	1	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	a0033	1005	1	0	0	1	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	a0034	1005	1	0	0	1	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	a0035	1005	1	0	0	0	1	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	a0036	1005	1	0	0	1	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	a0037	1005	1	0	1	0	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	a0038	1005	1	0	1	0	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	a0039	1005	1	0	0	1	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	a0040	1005	1	0	0	1	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	a0041	1005	1	0	0	0	0	1	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	a0042	1005	1	1	0	0	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	a0043	1005	1	0	0	1	0	0	copy fasta	ESPNL	chr2	238095340	238138287