JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ESPNL_chr2_238095340_238138287	0/0	a0044	1005	1	1	0	0	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	a0045	1005	1	1	0	0	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	a0046	1005	1	0	1	0	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPN_chr1_6419776_6465944	1/1	a0001	854	179	25	49	74	7	22	copy fasta	ESPN	chr1	6419776	6465944
ESPN_chr1_6419776_6465944	0/0	a0002	854	59	46	7	2	1	3	copy fasta	ESPN	chr1	6419776	6465944
ESPN_chr1_6419776_6465944	0/0	a0003	854	7	7	0	0	0	0	copy fasta	ESPN	chr1	6419776	6465944
ESPN_chr1_6419776_6465944	0/0	a0004	854	7	0	3	4	0	0	copy fasta	ESPN	chr1	6419776	6465944
ESPN_chr1_6419776_6465944	0/0	a0005	854	3	3	0	0	0	0	copy fasta	ESPN	chr1	6419776	6465944
ESPN_chr1_6419776_6465944	0/0	a0006	854	2	2	0	0	0	0	copy fasta	ESPN	chr1	6419776	6465944
ESPN_chr1_6419776_6465944	0/0	a0007	854	2	2	0	0	0	0	copy fasta	ESPN	chr1	6419776	6465944
ESPN_chr1_6419776_6465944	0/0	a0008	854	2	2	0	0	0	0	copy fasta	ESPN	chr1	6419776	6465944
ESPN_chr1_6419776_6465944	0/0	a0009	854	2	2	0	0	0	0	copy fasta	ESPN	chr1	6419776	6465944
ESPN_chr1_6419776_6465944	0/0	a0010	854	2	2	0	0	0	0	copy fasta	ESPN	chr1	6419776	6465944
ESPN_chr1_6419776_6465944	0/0	a0011	854	1	0	1	0	0	0	copy fasta	ESPN	chr1	6419776	6465944
ESPN_chr1_6419776_6465944	0/0	a0012	854	1	1	0	0	0	0	copy fasta	ESPN	chr1	6419776	6465944
ESPN_chr1_6419776_6465944	0/0	a0013	854	1	1	0	0	0	0	copy fasta	ESPN	chr1	6419776	6465944
ESPN_chr1_6419776_6465944	0/0	a0014	854	1	0	1	0	0	0	copy fasta	ESPN	chr1	6419776	6465944
ESPN_chr1_6419776_6465944	0/0	a0015	854	1	1	0	0	0	0	copy fasta	ESPN	chr1	6419776	6465944
ESPN_chr1_6419776_6465944	0/0	a0016	854	1	0	0	1	0	0	copy fasta	ESPN	chr1	6419776	6465944
ESPN_chr1_6419776_6465944	0/0	a0017	854	1	0	1	0	0	0	copy fasta	ESPN	chr1	6419776	6465944
ESPN_chr1_6419776_6465944	0/0	a0018	854	1	0	0	0	0	1	copy fasta	ESPN	chr1	6419776	6465944
ESPN_chr1_6419776_6465944	0/0	a0019	854	1	1	0	0	0	0	copy fasta	ESPN	chr1	6419776	6465944
ESPN_chr1_6419776_6465944	0/0	a0020	854	1	1	0	0	0	0	copy fasta	ESPN	chr1	6419776	6465944
ESPN_chr1_6419776_6465944	0/0	a0021	854	1	0	0	1	0	0	copy fasta	ESPN	chr1	6419776	6465944
ESR1_chr6_151802682_152108274	1/1	a0001	595	244	77	32	96	10	27	copy fasta	ESR1	chr6	151802682	152108274
ESR1_chr6_151802682_152108274	0/0	a0002	595	4	0	0	4	0	0	copy fasta	ESR1	chr6	151802682	152108274
ESR1_chr6_151802682_152108274	0/0	a0003	595	1	0	0	0	0	1	copy fasta	ESR1	chr6	151802682	152108274
ESR1_chr6_151802682_152108274	0/0	a0004	595	1	1	0	0	0	0	copy fasta	ESR1	chr6	151802682	152108274
ESR2_chr14_64223317_64299371	1/1	a0001	530	357	78	72	157	14	34	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	a0002	530	4	4	0	0	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	a0003	530	2	0	0	2	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	a0004	530	1	0	0	1	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	a0005	530	1	0	0	0	0	1	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	a0006	530	1	1	0	0	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	a0007	530	1	1	0	0	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	a0008	530	1	0	0	0	0	1	copy fasta	ESR2	chr14	64223317	64299371
ESRP1_chr8_94636174_94712466	1/1	a0001	681	371	95	68	156	9	41	copy fasta	ESRP1	chr8	94636174	94712466
ESRP1_chr8_94636174_94712466	0/0	a0002	681	1	0	0	0	0	1	copy fasta	ESRP1	chr8	94636174	94712466
ESRP1_chr8_94636174_94712466	0/0	a0003	681	1	1	0	0	0	0	copy fasta	ESRP1	chr8	94636174	94712466
ESRP1_chr8_94636174_94712466	0/0	a0004	681	1	0	0	0	1	0	copy fasta	ESRP1	chr8	94636174	94712466
ESRP2_chr16_68224033_68241127	1/1	a0001	717	254	77	55	80	8	32	copy fasta	ESRP2	chr16	68224033	68241127
ESRP2_chr16_68224033_68241127	0/0	a0002	717	9	0	0	9	0	0	copy fasta	ESRP2	chr16	68224033	68241127
ESRP2_chr16_68224033_68241127	0/0	a0003	717	8	8	0	0	0	0	copy fasta	ESRP2	chr16	68224033	68241127
ESRP2_chr16_68224033_68241127	0/0	a0004	717	1	1	0	0	0	0	copy fasta	ESRP2	chr16	68224033	68241127
ESRP2_chr16_68224033_68241127	0/0	a0005	717	1	0	1	0	0	0	copy fasta	ESRP2	chr16	68224033	68241127
ESRP2_chr16_68224033_68241127	0/0	a0006	717	1	0	0	1	0	0	copy fasta	ESRP2	chr16	68224033	68241127
ESRRA_chr11_64300524_64321743	1/1	a0001	423	382	94	70	163	12	41	copy fasta	ESRRA	chr11	64300524	64321743
ESRRA_chr11_64300524_64321743	0/0	a0002	423	3	3	0	0	0	0	copy fasta	ESRRA	chr11	64300524	64321743
ESRRA_chr11_64300524_64321743	0/0	a0003	423	1	0	0	1	0	0	copy fasta	ESRRA	chr11	64300524	64321743
ESRRA_chr11_64300524_64321743	0/0	a0004	423	1	1	0	0	0	0	copy fasta	ESRRA	chr11	64300524	64321743