JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ESRRA_chr11_64300524_64321743	0/0	a0005	410	1	0	0	0	0	1	copy fasta	ESRRA	chr11	64300524	64321743
ESRRB_chr14_76371137_76506837	1/1	a0001	454	290	83	52	107	14	32	copy fasta	ESRRB	chr14	76371137	76506837
ESRRB_chr14_76371137_76506837	0/0	a0002	454	21	3	3	13	0	2	copy fasta	ESRRB	chr14	76371137	76506837
ESRRB_chr14_76371137_76506837	0/0	a0003	454	4	0	0	4	0	0	copy fasta	ESRRB	chr14	76371137	76506837
ESRRB_chr14_76371137_76506837	0/0	a0004	454	1	0	1	0	0	0	copy fasta	ESRRB	chr14	76371137	76506837
ESRRB_chr14_76371137_76506837	0/0	a0005	454	1	0	0	1	0	0	copy fasta	ESRRB	chr14	76371137	76506837
ESRRB_chr14_76371137_76506837	0/0	a0006	454	1	0	0	1	0	0	copy fasta	ESRRB	chr14	76371137	76506837
ESRRG_chr1_216498251_216728429	1/1	a0001	458	286	80	50	116	8	30	copy fasta	ESRRG	chr1	216498251	216728429
ESS2_chr22_19125279_19149651	1/1	a0001	476	365	65	66	170	17	45	copy fasta	ESS2	chr22	19125279	19149651
ESS2_chr22_19125279_19149651	0/0	a0002	476	53	20	9	18	1	5	copy fasta	ESS2	chr22	19125279	19149651
ESS2_chr22_19125279_19149651	0/0	a0003	476	6	6	0	0	0	0	copy fasta	ESS2	chr22	19125279	19149651
ESS2_chr22_19125279_19149651	0/0	a0004	476	4	2	1	1	0	0	copy fasta	ESS2	chr22	19125279	19149651
ESS2_chr22_19125279_19149651	0/0	a0005	476	1	1	0	0	0	0	copy fasta	ESS2	chr22	19125279	19149651
ESS2_chr22_19125279_19149651	0/0	a0006	476	1	0	0	1	0	0	copy fasta	ESS2	chr22	19125279	19149651
ESS2_chr22_19125279_19149651	0/0	a0007	476	1	0	0	1	0	0	copy fasta	ESS2	chr22	19125279	19149651
ESS2_chr22_19125279_19149651	0/0	a0008	476	1	0	0	1	0	0	copy fasta	ESS2	chr22	19125279	19149651
ESX1_chrX_104245038_104259933	0/0	a0001	406	92	3	11	66	2	10	copy fasta	ESX1	chrX	104245038	104259933
ESX1_chrX_104245038_104259933	0/0	a0002	415	76	29	13	24	0	10	copy fasta	ESX1	chrX	104245038	104259933
ESX1_chrX_104245038_104259933	0/0	a0003	406	33	0	7	24	1	1	copy fasta	ESX1	chrX	104245038	104259933
ESX1_chrX_104245038_104259933	1/0	a0004	406	32	16	5	5	4	1	copy fasta	ESX1	chrX	104245038	104259933
ESX1_chrX_104245038_104259933	0/0	a0005	397	17	2	5	8	1	1	copy fasta	ESX1	chrX	104245038	104259933
ESX1_chrX_104245038_104259933	0/0	a0006	415	10	3	2	1	3	1	copy fasta	ESX1	chrX	104245038	104259933
ESX1_chrX_104245038_104259933	0/0	a0007	415	7	6	1	0	0	0	copy fasta	ESX1	chrX	104245038	104259933
ESX1_chrX_104245038_104259933	0/0	a0008	406	5	0	4	1	0	0	copy fasta	ESX1	chrX	104245038	104259933
ESX1_chrX_104245038_104259933	0/0	a0009	397	5	0	2	0	2	1	copy fasta	ESX1	chrX	104245038	104259933
ESX1_chrX_104245038_104259933	0/0	a0010	397	3	1	0	0	0	2	copy fasta	ESX1	chrX	104245038	104259933
ESX1_chrX_104245038_104259933	0/0	a0011	415	3	3	0	0	0	0	copy fasta	ESX1	chrX	104245038	104259933
ESX1_chrX_104245038_104259933	0/0	a0012	397	3	0	0	3	0	0	copy fasta	ESX1	chrX	104245038	104259933
ESX1_chrX_104245038_104259933	0/0	a0013	415	2	2	0	0	0	0	copy fasta	ESX1	chrX	104245038	104259933
ESX1_chrX_104245038_104259933	0/0	a0014	424	2	2	0	0	0	0	copy fasta	ESX1	chrX	104245038	104259933
ESX1_chrX_104245038_104259933	0/0	a0015	406	2	0	2	0	0	0	copy fasta	ESX1	chrX	104245038	104259933
ESX1_chrX_104245038_104259933	0/0	a0016	179	1	0	0	1	0	0	copy fasta	ESX1	chrX	104245038	104259933
ESX1_chrX_104245038_104259933	0/0	a0017	406	1	0	1	0	0	0	copy fasta	ESX1	chrX	104245038	104259933
ESX1_chrX_104245038_104259933	0/0	a0018	415	1	1	0	0	0	0	copy fasta	ESX1	chrX	104245038	104259933
ESX1_chrX_104245038_104259933	0/0	a0019	406	1	1	0	0	0	0	copy fasta	ESX1	chrX	104245038	104259933
ESX1_chrX_104245038_104259933	0/0	a0020	406	1	0	0	1	0	0	copy fasta	ESX1	chrX	104245038	104259933
ESX1_chrX_104245038_104259933	0/0	a0021	397	1	0	0	0	0	1	copy fasta	ESX1	chrX	104245038	104259933
ESX1_chrX_104245038_104259933	0/0	a0022	406	1	0	0	1	0	0	copy fasta	ESX1	chrX	104245038	104259933
ESX1_chrX_104245038_104259933	0/0	a0023	415	1	1	0	0	0	0	copy fasta	ESX1	chrX	104245038	104259933
ESX1_chrX_104245038_104259933	0/0	a0024	397	1	0	1	0	0	0	copy fasta	ESX1	chrX	104245038	104259933
ESX1_chrX_104245038_104259933	0/0	a0025	424	1	1	0	0	0	0	copy fasta	ESX1	chrX	104245038	104259933
ESX1_chrX_104245038_104259933	0/1	a0026	397	1	0	0	0	0	0	copy fasta	ESX1	chrX	104245038	104259933
ESX1_chrX_104245038_104259933	0/0	a0027	415	1	0	0	0	0	1	copy fasta	ESX1	chrX	104245038	104259933
ESX1_chrX_104245038_104259933	0/0	a0028	406	1	0	1	0	0	0	copy fasta	ESX1	chrX	104245038	104259933
ESX1_chrX_104245038_104259933	0/0	a0029	397	1	0	1	0	0	0	copy fasta	ESX1	chrX	104245038	104259933
ESX1_chrX_104245038_104259933	0/0	a0030	415	1	0	0	1	0	0	copy fasta	ESX1	chrX	104245038	104259933
ESX1_chrX_104245038_104259933	0/0	a0031	406	1	1	0	0	0	0	copy fasta	ESX1	chrX	104245038	104259933
ESX1_chrX_104245038_104259933	0/0	a0032	397	1	0	1	0	0	0	copy fasta	ESX1	chrX	104245038	104259933
ESX1_chrX_104245038_104259933	0/0	a0033	406	1	0	0	0	0	1	copy fasta	ESX1	chrX	104245038	104259933
ESX1_chrX_104245038_104259933	0/0	a0034	406	1	0	0	1	0	0	copy fasta	ESX1	chrX	104245038	104259933