JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ESX1_chrX_104245038_104259933	0/0	a0035	74	1	0	0	1	0	0	copy fasta	ESX1	chrX	104245038	104259933
ESX1_chrX_104245038_104259933	0/0	a0036	10	1	0	0	1	0	0	copy fasta	ESX1	chrX	104245038	104259933
ESYT1_chr12_56123267_56149674	1/1	a0001	1104	350	87	58	154	18	31	copy fasta	ESYT1	chr12	56123267	56149674
ESYT1_chr12_56123267_56149674	0/0	a0002	1104	8	0	0	8	0	0	copy fasta	ESYT1	chr12	56123267	56149674
ESYT1_chr12_56123267_56149674	0/0	a0003	1104	3	0	3	0	0	0	copy fasta	ESYT1	chr12	56123267	56149674
ESYT1_chr12_56123267_56149674	0/0	a0004	1104	1	1	0	0	0	0	copy fasta	ESYT1	chr12	56123267	56149674
ESYT1_chr12_56123267_56149674	0/0	a0005	1104	1	0	0	1	0	0	copy fasta	ESYT1	chr12	56123267	56149674
ESYT1_chr12_56123267_56149674	0/0	a0006	1104	1	0	0	0	0	1	copy fasta	ESYT1	chr12	56123267	56149674
ESYT1_chr12_56123267_56149674	0/0	a0007	1104	1	0	0	1	0	0	copy fasta	ESYT1	chr12	56123267	56149674
ESYT1_chr12_56123267_56149674	0/0	a0008	985	1	0	0	1	0	0	copy fasta	ESYT1	chr12	56123267	56149674
ESYT1_chr12_56123267_56149674	0/0	a0009	1104	1	0	1	0	0	0	copy fasta	ESYT1	chr12	56123267	56149674
ESYT1_chr12_56123267_56149674	0/0	a0010	1104	1	0	1	0	0	0	copy fasta	ESYT1	chr12	56123267	56149674
ESYT1_chr12_56123267_56149674	0/0	a0011	1104	1	0	0	1	0	0	copy fasta	ESYT1	chr12	56123267	56149674
ESYT1_chr12_56123267_56149674	0/0	a0012	1104	1	0	1	0	0	0	copy fasta	ESYT1	chr12	56123267	56149674
ESYT2_chr7_158725997_158834509	1/0	a0001	866	187	47	43	68	6	22	copy fasta	ESYT2	chr7	158725997	158834509
ESYT2_chr7_158725997_158834509	0/0	a0002	866	128	29	10	80	2	7	copy fasta	ESYT2	chr7	158725997	158834509
ESYT2_chr7_158725997_158834509	0/1	a0003	866	35	10	8	10	3	3	copy fasta	ESYT2	chr7	158725997	158834509
ESYT2_chr7_158725997_158834509	0/0	a0004	866	15	1	0	14	0	0	copy fasta	ESYT2	chr7	158725997	158834509
ESYT2_chr7_158725997_158834509	0/0	a0005	866	2	0	1	0	1	0	copy fasta	ESYT2	chr7	158725997	158834509
ESYT2_chr7_158725997_158834509	0/0	a0006	866	1	0	0	1	0	0	copy fasta	ESYT2	chr7	158725997	158834509
ESYT2_chr7_158725997_158834509	0/0	a0007	866	1	1	0	0	0	0	copy fasta	ESYT2	chr7	158725997	158834509
ESYT2_chr7_158725997_158834509	0/0	a0008	866	1	0	0	1	0	0	copy fasta	ESYT2	chr7	158725997	158834509
ESYT3_chr3_138429616_138484925	1/0	a0001	886	139	69	34	10	8	17	copy fasta	ESYT3	chr3	138429616	138484925
ESYT3_chr3_138429616_138484925	0/0	a0002	886	92	3	17	53	3	16	copy fasta	ESYT3	chr3	138429616	138484925
ESYT3_chr3_138429616_138484925	0/1	a0003	886	79	12	2	55	0	9	copy fasta	ESYT3	chr3	138429616	138484925
ESYT3_chr3_138429616_138484925	0/0	a0004	886	5	5	0	0	0	0	copy fasta	ESYT3	chr3	138429616	138484925
ESYT3_chr3_138429616_138484925	0/0	a0005	886	4	0	4	0	0	0	copy fasta	ESYT3	chr3	138429616	138484925
ESYT3_chr3_138429616_138484925	0/0	a0006	886	3	0	0	3	0	0	copy fasta	ESYT3	chr3	138429616	138484925
ESYT3_chr3_138429616_138484925	0/0	a0007	886	2	0	0	0	1	1	copy fasta	ESYT3	chr3	138429616	138484925
ESYT3_chr3_138429616_138484925	0/0	a0008	886	2	2	0	0	0	0	copy fasta	ESYT3	chr3	138429616	138484925
ESYT3_chr3_138429616_138484925	0/0	a0009	886	1	0	1	0	0	0	copy fasta	ESYT3	chr3	138429616	138484925
ESYT3_chr3_138429616_138484925	0/0	a0010	886	1	0	1	0	0	0	copy fasta	ESYT3	chr3	138429616	138484925
ESYT3_chr3_138429616_138484925	0/0	a0011	886	1	0	1	0	0	0	copy fasta	ESYT3	chr3	138429616	138484925
ESYT3_chr3_138429616_138484925	0/0	a0012	845	1	0	0	0	0	1	copy fasta	ESYT3	chr3	138429616	138484925
ESYT3_chr3_138429616_138484925	0/0	a0013	886	1	1	0	0	0	0	copy fasta	ESYT3	chr3	138429616	138484925
ESYT3_chr3_138429616_138484925	0/0	a0014	886	1	0	0	1	0	0	copy fasta	ESYT3	chr3	138429616	138484925
ESYT3_chr3_138429616_138484925	0/0	a0015	886	1	0	0	0	0	1	copy fasta	ESYT3	chr3	138429616	138484925
ESYT3_chr3_138429616_138484925	0/0	a0016	886	1	0	0	1	0	0	copy fasta	ESYT3	chr3	138429616	138484925
ESYT3_chr3_138429616_138484925	0/0	a0017	886	1	0	0	0	0	1	copy fasta	ESYT3	chr3	138429616	138484925
ESYT3_chr3_138429616_138484925	0/0	a0018	886	1	0	0	1	0	0	copy fasta	ESYT3	chr3	138429616	138484925
ESYT3_chr3_138429616_138484925	0/0	a0019	886	1	1	0	0	0	0	copy fasta	ESYT3	chr3	138429616	138484925
ESYT3_chr3_138429616_138484925	0/0	a0020	886	1	1	0	0	0	0	copy fasta	ESYT3	chr3	138429616	138484925
ETAA1_chr2_67392333_67417089	0/1	a0001	926	168	22	32	85	8	20	copy fasta	ETAA1	chr2	67392333	67417089
ETAA1_chr2_67392333_67417089	1/0	a0002	926	107	8	20	67	2	9	copy fasta	ETAA1	chr2	67392333	67417089
ETAA1_chr2_67392333_67417089	0/0	a0003	926	65	32	7	9	5	12	copy fasta	ETAA1	chr2	67392333	67417089
ETAA1_chr2_67392333_67417089	0/0	a0004	926	12	11	1	0	0	0	copy fasta	ETAA1	chr2	67392333	67417089
ETAA1_chr2_67392333_67417089	0/0	a0005	926	9	9	0	0	0	0	copy fasta	ETAA1	chr2	67392333	67417089
ETAA1_chr2_67392333_67417089	0/0	a0006	926	7	0	0	7	0	0	copy fasta	ETAA1	chr2	67392333	67417089
ETAA1_chr2_67392333_67417089	0/0	a0007	926	5	0	2	0	1	2	copy fasta	ETAA1	chr2	67392333	67417089
ETAA1_chr2_67392333_67417089	0/0	a0008	926	4	4	0	0	0	0	copy fasta	ETAA1	chr2	67392333	67417089