Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
AFF3_chr2_99540419_100147590	1/1	a0001	1226	75	44	15	5	4	5	copy fasta	AFF3	chr2	99540419	100147590
AFF3_chr2_99540419_100147590	0/0	a0002	1226	16	9	3	0	0	4	copy fasta	AFF3	chr2	99540419	100147590
AFF3_chr2_99540419_100147590	0/0	a0003	1224	6	1	2	2	0	1	copy fasta	AFF3	chr2	99540419	100147590
AFF3_chr2_99540419_100147590	0/0	a0004	1226	1	1	0	0	0	0	copy fasta	AFF3	chr2	99540419	100147590
AFF3_chr2_99540419_100147590	0/0	a0005	1226	1	1	0	0	0	0	copy fasta	AFF3	chr2	99540419	100147590
AFF3_chr2_99540419_100147590	0/0	a0006	1226	1	0	0	1	0	0	copy fasta	AFF3	chr2	99540419	100147590
AFF4_chr5_132870395_132968634	1/1	a0001	1163	380	82	66	183	12	35	copy fasta	AFF4	chr5	132870395	132968634
AFF4_chr5_132870395_132968634	0/0	a0002	1163	5	5	0	0	0	0	copy fasta	AFF4	chr5	132870395	132968634
AFF4_chr5_132870395_132968634	0/0	a0003	1163	2	1	0	1	0	0	copy fasta	AFF4	chr5	132870395	132968634
AFF4_chr5_132870395_132968634	0/0	a0004	1163	1	0	0	1	0	0	copy fasta	AFF4	chr5	132870395	132968634
AFF4_chr5_132870395_132968634	0/0	a0005	1163	1	0	1	0	0	0	copy fasta	AFF4	chr5	132870395	132968634
AFF4_chr5_132870395_132968634	0/0	a0006	1163	1	0	0	1	0	0	copy fasta	AFF4	chr5	132870395	132968634
AFF4_chr5_132870395_132968634	0/0	a0007	1163	1	0	0	0	0	1	copy fasta	AFF4	chr5	132870395	132968634
AFF4_chr5_132870395_132968634	0/0	a0008	1163	1	0	1	0	0	0	copy fasta	AFF4	chr5	132870395	132968634
AFG3L2_chr18_12323944_12382227	1/1	a0001	797	373	90	78	155	14	34	copy fasta	AFG3L2	chr18	12323944	12382227
AFG3L2_chr18_12323944_12382227	0/0	a0002	797	2	0	0	0	0	2	copy fasta	AFG3L2	chr18	12323944	12382227
AFG3L2_chr18_12323944_12382227	0/0	a0003	797	1	0	0	1	0	0	copy fasta	AFG3L2	chr18	12323944	12382227
AFMID_chr17_78182362_78212702	1/1	a0001	303	378	78	70	172	13	43	copy fasta	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	a0002	303	33	10	0	22	0	1	copy fasta	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	a0003	303	14	0	7	0	2	5	copy fasta	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	a0004	303	11	10	1	0	0	0	copy fasta	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	a0005	303	4	0	0	4	0	0	copy fasta	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	a0006	303	3	0	2	0	0	1	copy fasta	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	a0007	303	1	1	0	0	0	0	copy fasta	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	a0008	303	1	0	0	0	1	0	copy fasta	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	a0009	303	1	1	0	0	0	0	copy fasta	AFMID	chr17	78182362	78212702
AFM_chr4_73476745_73509001	1/1	a0001	599	324	62	68	150	12	30	copy fasta	AFM	chr4	73476745	73509001
AFM_chr4_73476745_73509001	0/0	a0002	599	20	9	2	3	2	4	copy fasta	AFM	chr4	73476745	73509001
AFM_chr4_73476745_73509001	0/0	a0003	599	5	0	0	5	0	0	copy fasta	AFM	chr4	73476745	73509001
AFM_chr4_73476745_73509001	0/0	a0004	599	4	4	0	0	0	0	copy fasta	AFM	chr4	73476745	73509001
AFM_chr4_73476745_73509001	0/0	a0005	599	3	1	2	0	0	0	copy fasta	AFM	chr4	73476745	73509001
AFM_chr4_73476745_73509001	0/0	a0006	599	2	2	0	0	0	0	copy fasta	AFM	chr4	73476745	73509001
AFM_chr4_73476745_73509001	0/0	a0007	599	2	0	2	0	0	0	copy fasta	AFM	chr4	73476745	73509001
AFM_chr4_73476745_73509001	0/0	a0008	599	2	2	0	0	0	0	copy fasta	AFM	chr4	73476745	73509001
AFM_chr4_73476745_73509001	0/0	a0009	599	1	1	0	0	0	0	copy fasta	AFM	chr4	73476745	73509001
AFM_chr4_73476745_73509001	0/0	a0010	599	1	1	0	0	0	0	copy fasta	AFM	chr4	73476745	73509001
AFM_chr4_73476745_73509001	0/0	a0011	599	1	0	0	1	0	0	copy fasta	AFM	chr4	73476745	73509001
AFM_chr4_73476745_73509001	0/0	a0012	599	1	0	0	1	0	0	copy fasta	AFM	chr4	73476745	73509001
AFM_chr4_73476745_73509001	0/0	a0013	599	1	1	0	0	0	0	copy fasta	AFM	chr4	73476745	73509001
AFM_chr4_73476745_73509001	0/0	a0014	599	1	1	0	0	0	0	copy fasta	AFM	chr4	73476745	73509001
AFP_chr4_73431221_73461174	1/1	a0001	609	353	68	68	161	17	37	copy fasta	AFP	chr4	73431221	73461174
AFP_chr4_73431221_73461174	0/0	a0002	609	23	21	1	0	0	1	copy fasta	AFP	chr4	73431221	73461174
AFP_chr4_73431221_73461174	0/0	a0003	609	3	0	1	0	0	2	copy fasta	AFP	chr4	73431221	73461174
AFP_chr4_73431221_73461174	0/0	a0004	609	2	2	0	0	0	0	copy fasta	AFP	chr4	73431221	73461174
AFP_chr4_73431221_73461174	0/0	a0005	284	2	0	1	1	0	0	copy fasta	AFP	chr4	73431221	73461174
AFP_chr4_73431221_73461174	0/0	a0006	609	2	0	1	0	1	0	copy fasta	AFP	chr4	73431221	73461174
AFP_chr4_73431221_73461174	0/0	a0007	609	1	1	0	0	0	0	copy fasta	AFP	chr4	73431221	73461174
AFP_chr4_73431221_73461174	0/0	a0008	609	1	1	0	0	0	0	copy fasta	AFP	chr4	73431221	73461174
AFP_chr4_73431221_73461174	0/0	a0009	609	1	0	0	1	0	0	copy fasta	AFP	chr4	73431221	73461174
AFP_chr4_73431221_73461174	0/0	a0010	609	1	0	0	1	0	0	copy fasta	AFP	chr4	73431221	73461174