JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ETNPPL_chr4_108737053_108768053	0/0	a0004	499	1	0	0	1	0	0	copy fasta	ETNPPL	chr4	108737053	108768053
ETNPPL_chr4_108737053_108768053	0/0	a0005	499	1	1	0	0	0	0	copy fasta	ETNPPL	chr4	108737053	108768053
ETNPPL_chr4_108737053_108768053	0/0	a0006	499	1	0	1	0	0	0	copy fasta	ETNPPL	chr4	108737053	108768053
ETNPPL_chr4_108737053_108768053	0/0	a0007	499	1	0	0	1	0	0	copy fasta	ETNPPL	chr4	108737053	108768053
ETNPPL_chr4_108737053_108768053	0/0	a0008	499	1	0	0	1	0	0	copy fasta	ETNPPL	chr4	108737053	108768053
ETS1_chr11_128453765_128592558	1/1	a0001	485	286	84	62	94	12	32	copy fasta	ETS1	chr11	128453765	128592558
ETS2_chr21_38800929_38829955	1/1	a0001	469	421	93	78	188	18	42	copy fasta	ETS2	chr21	38800929	38829955
ETS2_chr21_38800929_38829955	0/0	a0002	469	4	4	0	0	0	0	copy fasta	ETS2	chr21	38800929	38829955
ETS2_chr21_38800929_38829955	0/0	a0003	469	1	1	0	0	0	0	copy fasta	ETS2	chr21	38800929	38829955
ETV1_chr7_13886229_13994666	1/1	a0001	477	219	63	41	79	12	22	copy fasta	ETV1	chr7	13886229	13994666
ETV1_chr7_13886229_13994666	0/0	a0002	477	101	17	17	49	6	12	copy fasta	ETV1	chr7	13886229	13994666
ETV2_chr19_35636745_35649871	1/1	a0001	342	350	75	64	152	12	45	copy fasta	ETV2	chr19	35636745	35649871
ETV2_chr19_35636745_35649871	0/0	a0002	342	65	12	16	31	4	2	copy fasta	ETV2	chr19	35636745	35649871
ETV2_chr19_35636745_35649871	0/0	a0003	342	17	4	0	12	0	1	copy fasta	ETV2	chr19	35636745	35649871
ETV2_chr19_35636745_35649871	0/0	a0004	342	2	2	0	0	0	0	copy fasta	ETV2	chr19	35636745	35649871
ETV2_chr19_35636745_35649871	0/0	a0005	342	1	1	0	0	0	0	copy fasta	ETV2	chr19	35636745	35649871
ETV2_chr19_35636745_35649871	0/0	a0006	342	1	1	0	0	0	0	copy fasta	ETV2	chr19	35636745	35649871
ETV2_chr19_35636745_35649871	0/0	a0007	342	1	1	0	0	0	0	copy fasta	ETV2	chr19	35636745	35649871
ETV2_chr19_35636745_35649871	0/0	a0008	342	1	0	0	1	0	0	copy fasta	ETV2	chr19	35636745	35649871
ETV3L_chr1_157087043_157104808	1/0	a0001	361	291	46	58	135	13	38	copy fasta	ETV3L	chr1	157087043	157104808
ETV3L_chr1_157087043_157104808	0/1	a0002	361	87	12	12	55	3	4	copy fasta	ETV3L	chr1	157087043	157104808
ETV3L_chr1_157087043_157104808	0/0	a0003	361	56	25	7	17	0	7	copy fasta	ETV3L	chr1	157087043	157104808
ETV3L_chr1_157087043_157104808	0/0	a0004	361	7	7	0	0	0	0	copy fasta	ETV3L	chr1	157087043	157104808
ETV3L_chr1_157087043_157104808	0/0	a0005	361	6	2	0	4	0	0	copy fasta	ETV3L	chr1	157087043	157104808
ETV3L_chr1_157087043_157104808	0/0	a0006	361	5	1	3	0	1	0	copy fasta	ETV3L	chr1	157087043	157104808
ETV3L_chr1_157087043_157104808	0/0	a0007	361	4	0	2	0	1	1	copy fasta	ETV3L	chr1	157087043	157104808
ETV3L_chr1_157087043_157104808	0/0	a0008	361	2	2	0	0	0	0	copy fasta	ETV3L	chr1	157087043	157104808
ETV3L_chr1_157087043_157104808	0/0	a0009	361	2	2	0	0	0	0	copy fasta	ETV3L	chr1	157087043	157104808
ETV3L_chr1_157087043_157104808	0/0	a0010	361	1	0	0	1	0	0	copy fasta	ETV3L	chr1	157087043	157104808
ETV3L_chr1_157087043_157104808	0/0	a0011	361	1	0	1	0	0	0	copy fasta	ETV3L	chr1	157087043	157104808
ETV3L_chr1_157087043_157104808	0/0	a0012	361	1	0	1	0	0	0	copy fasta	ETV3L	chr1	157087043	157104808
ETV3L_chr1_157087043_157104808	0/0	a0013	361	1	1	0	0	0	0	copy fasta	ETV3L	chr1	157087043	157104808
ETV3_chr1_157116191_157143395	1/1	a0001	512	402	92	73	183	10	42	copy fasta	ETV3	chr1	157116191	157143395
ETV3_chr1_157116191_157143395	0/0	a0002	512	1	0	1	0	0	0	copy fasta	ETV3	chr1	157116191	157143395
ETV3_chr1_157116191_157143395	0/0	a0003	512	1	0	0	1	0	0	copy fasta	ETV3	chr1	157116191	157143395
ETV4_chr17_43522846_43551340	1/1	a0001	484	390	84	73	171	14	46	copy fasta	ETV4	chr17	43522846	43551340
ETV4_chr17_43522846_43551340	0/0	a0002	484	4	4	0	0	0	0	copy fasta	ETV4	chr17	43522846	43551340
ETV4_chr17_43522846_43551340	0/0	a0003	484	2	0	2	0	0	0	copy fasta	ETV4	chr17	43522846	43551340
ETV4_chr17_43522846_43551340	0/0	a0004	484	1	0	0	1	0	0	copy fasta	ETV4	chr17	43522846	43551340
ETV4_chr17_43522846_43551340	0/0	a0005	484	1	0	1	0	0	0	copy fasta	ETV4	chr17	43522846	43551340
ETV5_chr3_186041314_186114089	1/1	a0001	510	335	84	58	153	12	26	copy fasta	ETV5	chr3	186041314	186114089
ETV5_chr3_186041314_186114089	0/0	a0002	510	3	3	0	0	0	0	copy fasta	ETV5	chr3	186041314	186114089
ETV5_chr3_186041314_186114089	0/0	a0003	510	1	1	0	0	0	0	copy fasta	ETV5	chr3	186041314	186114089
ETV5_chr3_186041314_186114089	0/0	a0004	510	1	0	0	1	0	0	copy fasta	ETV5	chr3	186041314	186114089
ETV6_chr12_11644674_11900377	1/1	a0001	452	262	74	52	96	10	28	copy fasta	ETV6	chr12	11644674	11900377
ETV7_chr6_36361194_36392669	1/1	a0001	341	407	87	83	180	14	41	copy fasta	ETV7	chr6	36361194	36392669
ETV7_chr6_36361194_36392669	0/0	a0002	341	41	8	1	26	1	5	copy fasta	ETV7	chr6	36361194	36392669
ETV7_chr6_36361194_36392669	0/0	a0003	341	4	4	0	0	0	0	copy fasta	ETV7	chr6	36361194	36392669
ETV7_chr6_36361194_36392669	0/0	a0004	341	2	0	0	2	0	0	copy fasta	ETV7	chr6	36361194	36392669
ETV7_chr6_36361194_36392669	0/0	a0005	341	2	0	2	0	0	0	copy fasta	ETV7	chr6	36361194	36392669