JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ETV7_chr6_36361194_36392669	0/0	a0006	341	1	1	0	0	0	0	copy fasta	ETV7	chr6	36361194	36392669
ETV7_chr6_36361194_36392669	0/0	a0007	341	1	0	0	0	0	1	copy fasta	ETV7	chr6	36361194	36392669
ETV7_chr6_36361194_36392669	0/0	a0008	341	1	0	0	0	0	1	copy fasta	ETV7	chr6	36361194	36392669
ETV7_chr6_36361194_36392669	0/0	a0009	341	1	0	0	1	0	0	copy fasta	ETV7	chr6	36361194	36392669
ETV7_chr6_36361194_36392669	0/0	a0010	341	1	0	0	0	1	0	copy fasta	ETV7	chr6	36361194	36392669
ETV7_chr6_36361194_36392669	0/0	a0011	341	1	0	0	1	0	0	copy fasta	ETV7	chr6	36361194	36392669
EVA1A_chr2_75487318_75565939	1/1	a0001	152	367	82	69	160	17	37	copy fasta	EVA1A	chr2	75487318	75565939
EVA1A_chr2_75487318_75565939	0/0	a0002	149	17	12	1	0	1	3	copy fasta	EVA1A	chr2	75487318	75565939
EVA1B_chr1_36317030_36328645	0/0	a0000	0	1	1	0	0	0	0	copy fasta	EVA1B	chr1	36317030	36328645
EVA1B_chr1_36317030_36328645	1/1	a0001	165	402	97	84	158	15	46	copy fasta	EVA1B	chr1	36317030	36328645
EVA1B_chr1_36317030_36328645	0/0	a0002	165	1	0	0	0	1	0	copy fasta	EVA1B	chr1	36317030	36328645
EVA1B_chr1_36317030_36328645	0/0	a0003	165	1	0	1	0	0	0	copy fasta	EVA1B	chr1	36317030	36328645
EVA1B_chr1_36317030_36328645	0/0	a0004	165	1	0	1	0	0	0	copy fasta	EVA1B	chr1	36317030	36328645
EVA1C_chr21_32407706_32520387	1/1	a0001	441	330	79	64	135	14	36	copy fasta	EVA1C	chr21	32407706	32520387
EVA1C_chr21_32407706_32520387	0/0	a0002	441	6	5	1	0	0	0	copy fasta	EVA1C	chr21	32407706	32520387
EVA1C_chr21_32407706_32520387	0/0	a0003	441	3	2	1	0	0	0	copy fasta	EVA1C	chr21	32407706	32520387
EVA1C_chr21_32407706_32520387	0/0	a0004	441	1	0	1	0	0	0	copy fasta	EVA1C	chr21	32407706	32520387
EVA1C_chr21_32407706_32520387	0/0	a0005	441	1	0	1	0	0	0	copy fasta	EVA1C	chr21	32407706	32520387
EVA1C_chr21_32407706_32520387	0/0	a0006	441	1	0	0	0	0	1	copy fasta	EVA1C	chr21	32407706	32520387
EVA1C_chr21_32407706_32520387	0/0	a0007	441	1	1	0	0	0	0	copy fasta	EVA1C	chr21	32407706	32520387
EVA1C_chr21_32407706_32520387	0/0	a0008	441	1	0	0	0	0	1	copy fasta	EVA1C	chr21	32407706	32520387
EVA1C_chr21_32407706_32520387	0/0	a0009	364	1	0	0	1	0	0	copy fasta	EVA1C	chr21	32407706	32520387
EVA1C_chr21_32407706_32520387	0/0	a0010	441	1	1	0	0	0	0	copy fasta	EVA1C	chr21	32407706	32520387
EVC2_chr4_5557439_5713559	1/1	a0001	1308	77	6	27	19	8	15	copy fasta	EVC2	chr4	5557439	5713559
EVC2_chr4_5557439_5713559	0/0	a0002	1308	65	30	12	17	1	5	copy fasta	EVC2	chr4	5557439	5713559
EVC2_chr4_5557439_5713559	0/0	a0003	1308	33	10	5	14	0	4	copy fasta	EVC2	chr4	5557439	5713559
EVC2_chr4_5557439_5713559	0/0	a0004	1308	27	1	8	13	2	3	copy fasta	EVC2	chr4	5557439	5713559
EVC2_chr4_5557439_5713559	0/0	a0005	1308	23	0	6	13	0	4	copy fasta	EVC2	chr4	5557439	5713559
EVC2_chr4_5557439_5713559	0/0	a0006	1308	23	1	6	9	1	6	copy fasta	EVC2	chr4	5557439	5713559
EVC2_chr4_5557439_5713559	0/0	a0007	1308	8	8	0	0	0	0	copy fasta	EVC2	chr4	5557439	5713559
EVC2_chr4_5557439_5713559	0/0	a0008	1308	3	3	0	0	0	0	copy fasta	EVC2	chr4	5557439	5713559
EVC2_chr4_5557439_5713559	0/0	a0009	1308	3	3	0	0	0	0	copy fasta	EVC2	chr4	5557439	5713559
EVC2_chr4_5557439_5713559	0/0	a0010	1308	2	2	0	0	0	0	copy fasta	EVC2	chr4	5557439	5713559
EVC2_chr4_5557439_5713559	0/0	a0011	1308	2	1	0	1	0	0	copy fasta	EVC2	chr4	5557439	5713559
EVC2_chr4_5557439_5713559	0/0	a0012	1308	2	2	0	0	0	0	copy fasta	EVC2	chr4	5557439	5713559
EVC2_chr4_5557439_5713559	0/0	a0013	1308	2	2	0	0	0	0	copy fasta	EVC2	chr4	5557439	5713559
EVC2_chr4_5557439_5713559	0/0	a0014	1308	2	0	0	2	0	0	copy fasta	EVC2	chr4	5557439	5713559
EVC2_chr4_5557439_5713559	0/0	a0015	1308	2	2	0	0	0	0	copy fasta	EVC2	chr4	5557439	5713559
EVC2_chr4_5557439_5713559	0/0	a0016	1308	2	2	0	0	0	0	copy fasta	EVC2	chr4	5557439	5713559
EVC2_chr4_5557439_5713559	0/0	a0017	1308	1	1	0	0	0	0	copy fasta	EVC2	chr4	5557439	5713559
EVC2_chr4_5557439_5713559	0/0	a0018	1308	1	1	0	0	0	0	copy fasta	EVC2	chr4	5557439	5713559
EVC2_chr4_5557439_5713559	0/0	a0019	1308	1	1	0	0	0	0	copy fasta	EVC2	chr4	5557439	5713559
EVC2_chr4_5557439_5713559	0/0	a0020	1308	1	1	0	0	0	0	copy fasta	EVC2	chr4	5557439	5713559
EVC2_chr4_5557439_5713559	0/0	a0021	1308	1	1	0	0	0	0	copy fasta	EVC2	chr4	5557439	5713559
EVC2_chr4_5557439_5713559	0/0	a0022	1308	1	0	0	1	0	0	copy fasta	EVC2	chr4	5557439	5713559
EVC2_chr4_5557439_5713559	0/0	a0023	1308	1	1	0	0	0	0	copy fasta	EVC2	chr4	5557439	5713559
EVC2_chr4_5557439_5713559	0/0	a0024	1308	1	1	0	0	0	0	copy fasta	EVC2	chr4	5557439	5713559
EVC2_chr4_5557439_5713559	0/0	a0025	1308	1	1	0	0	0	0	copy fasta	EVC2	chr4	5557439	5713559
EVC2_chr4_5557439_5713559	0/0	a0026	1308	1	1	0	0	0	0	copy fasta	EVC2	chr4	5557439	5713559
EVC2_chr4_5557439_5713559	0/0	a0027	1308	1	0	0	0	0	1	copy fasta	EVC2	chr4	5557439	5713559