JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
EVC2_chr4_5557439_5713559	0/0	a0028	1308	1	1	0	0	0	0	copy fasta	EVC2	chr4	5557439	5713559
EVC2_chr4_5557439_5713559	0/0	a0029	1308	1	1	0	0	0	0	copy fasta	EVC2	chr4	5557439	5713559
EVC2_chr4_5557439_5713559	0/0	a0030	1308	1	1	0	0	0	0	copy fasta	EVC2	chr4	5557439	5713559
EVC2_chr4_5557439_5713559	0/0	a0031	1308	1	0	0	1	0	0	copy fasta	EVC2	chr4	5557439	5713559
EVC2_chr4_5557439_5713559	0/0	a0032	1308	1	1	0	0	0	0	copy fasta	EVC2	chr4	5557439	5713559
EVC_chr4_5706201_5819305	0/0	a0001	992	89	8	17	49	4	11	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	a0002	992	64	6	13	35	5	5	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	a0003	992	39	0	10	20	2	7	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	a0004	992	33	17	9	5	0	2	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	a0005	992	20	2	1	10	2	5	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	a0006	992	17	17	0	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	a0007	992	9	0	1	7	0	1	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	a0008	992	8	0	2	4	0	2	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	a0009	992	6	2	3	0	0	1	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	a0010	992	5	0	0	3	0	2	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	a0011	992	5	5	0	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	a0012	992	4	3	0	0	0	1	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	a0013	992	3	0	2	0	1	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	a0014	992	3	0	0	3	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	a0015	992	3	0	0	1	0	2	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	a0016	992	3	3	0	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	a0017	992	3	3	0	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	a0018	992	2	0	0	1	0	1	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	a0019	992	2	2	0	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	a0020	992	2	2	0	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	a0021	992	2	0	2	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	a0022	992	2	2	0	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	a0023	992	1	0	1	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	a0024	992	1	0	0	0	0	1	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	a0025	992	1	0	0	0	0	1	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	a0026	992	1	0	0	1	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	a0027	992	1	0	0	1	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	a0028	992	1	0	0	1	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	a0029	992	1	0	0	1	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	a0030	992	1	0	1	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	a0031	992	1	0	0	0	1	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	a0032	992	1	0	0	0	1	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	a0033	992	1	1	0	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	a0034	992	1	0	1	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	a0035	992	1	1	0	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	a0036	992	1	1	0	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	a0037	992	1	1	0	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	a0038	992	1	0	0	1	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	a0039	992	1	1	0	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	a0040	992	1	1	0	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	a0041	992	1	0	0	1	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	a0042	992	1	0	0	0	0	1	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	a0043	992	1	0	0	1	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	a0044	992	1	1	0	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	a0045	992	1	0	0	1	0	0	copy fasta	EVC	chr4	5706201	5819305