JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
EVC_chr4_5706201_5819305	0/0	a0046	992	1	0	1	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	a0047	992	1	0	0	1	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	a0048	992	1	0	0	1	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	a0049	992	1	1	0	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	a0050	992	1	1	0	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	a0051	992	1	1	0	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	a0052	992	1	1	0	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	a0053	992	1	0	0	1	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	a0054	992	1	1	0	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	a0055	992	1	0	0	1	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	1/0	a0056	992	1	0	0	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	a0057	992	1	0	0	1	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	a0058	992	1	1	0	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	a0059	983	1	0	0	0	0	1	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	a0060	992	1	0	0	1	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	a0061	992	1	1	0	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	a0062	992	1	1	0	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	a0063	992	1	1	0	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	a0064	992	1	1	0	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	a0065	992	1	0	1	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	a0066	992	1	1	0	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	a0067	992	1	0	1	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVI2A_chr17_31311410_31326622	1/1	a0001	236	370	89	65	166	12	36	copy fasta	EVI2A	chr17	31311410	31326622
EVI2A_chr17_31311410_31326622	0/0	a0002	236	3	0	0	3	0	0	copy fasta	EVI2A	chr17	31311410	31326622
EVI2A_chr17_31311410_31326622	0/0	a0003	236	2	0	0	0	0	2	copy fasta	EVI2A	chr17	31311410	31326622
EVI2A_chr17_31311410_31326622	0/0	a0004	236	1	0	0	1	0	0	copy fasta	EVI2A	chr17	31311410	31326622
EVI2A_chr17_31311410_31326622	0/0	a0005	236	1	1	0	0	0	0	copy fasta	EVI2A	chr17	31311410	31326622
EVI2A_chr17_31311410_31326622	0/0	a0006	236	1	0	1	0	0	0	copy fasta	EVI2A	chr17	31311410	31326622
EVI2B_chr17_31298770_31319054	1/1	a0001	448	364	80	58	180	12	32	copy fasta	EVI2B	chr17	31298770	31319054
EVI2B_chr17_31298770_31319054	0/0	a0002	448	5	5	0	0	0	0	copy fasta	EVI2B	chr17	31298770	31319054
EVI2B_chr17_31298770_31319054	0/0	a0003	448	2	2	0	0	0	0	copy fasta	EVI2B	chr17	31298770	31319054
EVI2B_chr17_31298770_31319054	0/0	a0004	448	1	1	0	0	0	0	copy fasta	EVI2B	chr17	31298770	31319054
EVI5L_chr19_7825218_7869976	1/1	a0001	805	395	90	74	169	16	44	copy fasta	EVI5L	chr19	7825218	7869976
EVI5L_chr19_7825218_7869976	0/0	a0002	805	1	0	0	1	0	0	copy fasta	EVI5L	chr19	7825218	7869976
EVI5_chr1_92503696_92790108	0/1	a0001	826	121	75	18	15	3	9	copy fasta	EVI5	chr1	92503696	92790108
EVI5_chr1_92503696_92790108	0/0	a0002	826	34	4	14	6	3	7	copy fasta	EVI5	chr1	92503696	92790108
EVI5_chr1_92503696_92790108	1/0	a0003	826	11	3	0	5	2	0	copy fasta	EVI5	chr1	92503696	92790108
EVI5_chr1_92503696_92790108	0/0	a0004	826	1	0	0	1	0	0	copy fasta	EVI5	chr1	92503696	92790108
EVI5_chr1_92503696_92790108	0/0	a0005	826	1	0	0	1	0	0	copy fasta	EVI5	chr1	92503696	92790108
EVL_chr14_100060422_100149236	1/1	a0001	418	340	82	70	146	6	34	copy fasta	EVL	chr14	100060422	100149236
EVL_chr14_100060422_100149236	0/0	a0002	418	14	14	0	0	0	0	copy fasta	EVL	chr14	100060422	100149236
EVPLL_chr17_18372778_18394647	0/0	a0001	301	204	77	46	54	9	18	copy fasta	EVPLL	chr17	18372778	18394647
EVPLL_chr17_18372778_18394647	1/1	a0002	301	196	15	34	116	5	24	copy fasta	EVPLL	chr17	18372778	18394647
EVPLL_chr17_18372778_18394647	0/0	a0003	301	6	6	0	0	0	0	copy fasta	EVPLL	chr17	18372778	18394647
EVPLL_chr17_18372778_18394647	0/0	a0004	301	1	1	0	0	0	0	copy fasta	EVPLL	chr17	18372778	18394647
EVPLL_chr17_18372778_18394647	0/0	a0005	208	1	1	0	0	0	0	copy fasta	EVPLL	chr17	18372778	18394647
EVPL_chr17_76001845_76032306	0/1	a0001	2033	196	18	41	95	8	33	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	1/0	a0002	2033	83	8	16	42	5	11	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	a0003	2033	29	26	3	0	0	0	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	a0004	2033	19	4	3	11	0	1	copy fasta	EVPL	chr17	76001845	76032306