JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
EVPL_chr17_76001845_76032306	0/0	a0005	2033	11	9	2	0	0	0	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	a0006	2033	9	2	1	5	1	0	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	a0007	2033	5	1	3	0	1	0	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	a0008	2033	4	4	0	0	0	0	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	a0009	2033	3	3	0	0	0	0	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	a0010	2033	3	3	0	0	0	0	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	a0011	2033	3	3	0	0	0	0	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	a0012	2033	3	1	1	1	0	0	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	a0013	2033	2	2	0	0	0	0	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	a0014	2033	2	0	0	2	0	0	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	a0015	2033	2	0	2	0	0	0	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	a0016	2033	2	0	0	2	0	0	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	a0017	2033	2	0	0	2	0	0	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	a0018	2033	2	2	0	0	0	0	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	a0019	2033	1	0	1	0	0	0	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	a0020	2033	1	0	0	0	0	1	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	a0021	2033	1	0	0	1	0	0	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	a0022	2033	1	1	0	0	0	0	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	a0023	2037	1	0	1	0	0	0	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	a0024	2033	1	0	1	0	0	0	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	a0025	2033	1	1	0	0	0	0	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	a0026	2033	1	1	0	0	0	0	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	a0027	2033	1	0	1	0	0	0	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	a0028	2033	1	1	0	0	0	0	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	a0029	2033	1	0	0	0	0	1	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	a0030	2033	1	0	0	0	1	0	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	a0031	2033	1	0	0	1	0	0	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	a0032	2033	1	0	0	1	0	0	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	a0033	2033	1	1	0	0	0	0	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	a0034	2033	1	1	0	0	0	0	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	a0035	2033	1	0	0	1	0	0	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	a0036	2033	1	0	0	1	0	0	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	a0037	2033	1	1	0	0	0	0	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	a0038	2033	1	0	0	1	0	0	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	a0039	2033	1	0	0	1	0	0	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	a0040	2033	1	0	0	0	0	1	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	a0041	2033	1	1	0	0	0	0	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	a0042	2033	1	0	0	1	0	0	copy fasta	EVPL	chr17	76001845	76032306
EVX1_chr7_27237802_27252830	1/1	a0001	407	392	93	72	183	10	32	copy fasta	EVX1	chr7	27237802	27252830
EVX1_chr7_27237802_27252830	0/0	a0002	407	4	4	0	0	0	0	copy fasta	EVX1	chr7	27237802	27252830
EVX1_chr7_27237802_27252830	0/0	a0003	407	1	1	0	0	0	0	copy fasta	EVX1	chr7	27237802	27252830
EVX1_chr7_27237802_27252830	0/0	a0004	407	1	0	0	1	0	0	copy fasta	EVX1	chr7	27237802	27252830
EVX2_chr2_176072472_176088962	1/1	a0001	476	415	91	70	196	13	43	copy fasta	EVX2	chr2	176072472	176088962
EVX2_chr2_176072472_176088962	0/0	a0002	475	4	0	0	4	0	0	copy fasta	EVX2	chr2	176072472	176088962
EVX2_chr2_176072472_176088962	0/0	a0003	476	3	0	0	3	0	0	copy fasta	EVX2	chr2	176072472	176088962
EVX2_chr2_176072472_176088962	0/0	a0004	476	2	0	0	2	0	0	copy fasta	EVX2	chr2	176072472	176088962
EVX2_chr2_176072472_176088962	0/0	a0005	476	1	0	0	0	0	1	copy fasta	EVX2	chr2	176072472	176088962
EVX2_chr2_176072472_176088962	0/0	a0006	476	1	0	0	1	0	0	copy fasta	EVX2	chr2	176072472	176088962
EVX2_chr2_176072472_176088962	0/0	a0007	476	1	0	0	1	0	0	copy fasta	EVX2	chr2	176072472	176088962
EVX2_chr2_176072472_176088962	0/0	a0008	476	1	0	0	1	0	0	copy fasta	EVX2	chr2	176072472	176088962