JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
EVX2_chr2_176072472_176088962	0/0	a0009	476	1	0	0	0	1	0	copy fasta	EVX2	chr2	176072472	176088962
EVX2_chr2_176072472_176088962	0/0	a0010	476	1	1	0	0	0	0	copy fasta	EVX2	chr2	176072472	176088962
EWSR1_chr22_29263268_29305521	1/1	a0001	656	388	95	61	176	12	42	copy fasta	EWSR1	chr22	29263268	29305521
EWSR1_chr22_29263268_29305521	0/0	a0002	656	1	1	0	0	0	0	copy fasta	EWSR1	chr22	29263268	29305521
EWSR1_chr22_29263268_29305521	0/0	a0003	656	1	0	1	0	0	0	copy fasta	EWSR1	chr22	29263268	29305521
EXD1_chr15_41177728_41235757	0/1	a0001	572	267	77	47	109	6	27	copy fasta	EXD1	chr15	41177728	41235757
EXD1_chr15_41177728_41235757	1/0	a0002	572	42	16	11	3	4	7	copy fasta	EXD1	chr15	41177728	41235757
EXD1_chr15_41177728_41235757	0/0	a0003	572	3	0	0	3	0	0	copy fasta	EXD1	chr15	41177728	41235757
EXD1_chr15_41177728_41235757	0/0	a0004	572	1	0	0	0	0	1	copy fasta	EXD1	chr15	41177728	41235757
EXD1_chr15_41177728_41235757	0/0	a0005	572	1	0	0	1	0	0	copy fasta	EXD1	chr15	41177728	41235757
EXD1_chr15_41177728_41235757	0/0	a0006	572	1	1	0	0	0	0	copy fasta	EXD1	chr15	41177728	41235757
EXD1_chr15_41177728_41235757	0/0	a0007	572	1	0	0	1	0	0	copy fasta	EXD1	chr15	41177728	41235757
EXD1_chr15_41177728_41235757	0/0	a0008	572	1	0	0	1	0	0	copy fasta	EXD1	chr15	41177728	41235757
EXD1_chr15_41177728_41235757	0/0	a0009	572	1	0	0	0	0	1	copy fasta	EXD1	chr15	41177728	41235757
EXD2_chr14_69186498_69249018	0/1	a0001	621	168	67	38	22	8	32	copy fasta	EXD2	chr14	69186498	69249018
EXD2_chr14_69186498_69249018	1/0	a0002	621	64	25	16	9	5	8	copy fasta	EXD2	chr14	69186498	69249018
EXD2_chr14_69186498_69249018	0/0	a0003	621	1	0	0	0	1	0	copy fasta	EXD2	chr14	69186498	69249018
EXD2_chr14_69186498_69249018	0/0	a0004	621	1	0	0	1	0	0	copy fasta	EXD2	chr14	69186498	69249018
EXD3_chr9_137301896_137428162	0/0	a0001	876	20	0	3	10	2	5	copy fasta	EXD3	chr9	137301896	137428162
EXD3_chr9_137301896_137428162	0/1	a0002	876	13	6	2	1	0	3	copy fasta	EXD3	chr9	137301896	137428162
EXD3_chr9_137301896_137428162	0/0	a0003	876	5	0	1	2	2	0	copy fasta	EXD3	chr9	137301896	137428162
EXD3_chr9_137301896_137428162	0/0	a0004	876	5	4	0	0	0	1	copy fasta	EXD3	chr9	137301896	137428162
EXD3_chr9_137301896_137428162	0/0	a0005	876	4	4	0	0	0	0	copy fasta	EXD3	chr9	137301896	137428162
EXD3_chr9_137301896_137428162	1/0	a0006	876	4	2	1	0	0	0	copy fasta	EXD3	chr9	137301896	137428162
EXD3_chr9_137301896_137428162	0/0	a0007	876	2	0	1	0	1	0	copy fasta	EXD3	chr9	137301896	137428162
EXD3_chr9_137301896_137428162	0/0	a0008	876	2	2	0	0	0	0	copy fasta	EXD3	chr9	137301896	137428162
EXD3_chr9_137301896_137428162	0/0	a0009	876	2	0	1	0	0	1	copy fasta	EXD3	chr9	137301896	137428162
EXD3_chr9_137301896_137428162	0/0	a0010	876	2	2	0	0	0	0	copy fasta	EXD3	chr9	137301896	137428162
EXD3_chr9_137301896_137428162	0/0	a0011	876	2	0	0	1	0	1	copy fasta	EXD3	chr9	137301896	137428162
EXD3_chr9_137301896_137428162	0/0	a0012	876	2	2	0	0	0	0	copy fasta	EXD3	chr9	137301896	137428162
EXD3_chr9_137301896_137428162	0/0	a0013	876	1	0	0	1	0	0	copy fasta	EXD3	chr9	137301896	137428162
EXD3_chr9_137301896_137428162	0/0	a0014	876	1	1	0	0	0	0	copy fasta	EXD3	chr9	137301896	137428162
EXD3_chr9_137301896_137428162	0/0	a0015	876	1	0	0	0	1	0	copy fasta	EXD3	chr9	137301896	137428162
EXD3_chr9_137301896_137428162	0/0	a0016	876	1	0	0	1	0	0	copy fasta	EXD3	chr9	137301896	137428162
EXD3_chr9_137301896_137428162	0/0	a0017	876	1	1	0	0	0	0	copy fasta	EXD3	chr9	137301896	137428162
EXD3_chr9_137301896_137428162	0/0	a0018	876	1	1	0	0	0	0	copy fasta	EXD3	chr9	137301896	137428162
EXD3_chr9_137301896_137428162	0/0	a0019	852	1	1	0	0	0	0	copy fasta	EXD3	chr9	137301896	137428162
EXD3_chr9_137301896_137428162	0/0	a0020	876	1	0	0	0	0	1	copy fasta	EXD3	chr9	137301896	137428162
EXD3_chr9_137301896_137428162	0/0	a0021	876	1	1	0	0	0	0	copy fasta	EXD3	chr9	137301896	137428162
EXD3_chr9_137301896_137428162	0/0	a0022	876	1	0	1	0	0	0	copy fasta	EXD3	chr9	137301896	137428162
EXD3_chr9_137301896_137428162	0/0	a0023	876	1	0	1	0	0	0	copy fasta	EXD3	chr9	137301896	137428162
EXD3_chr9_137301896_137428162	0/0	a0024	876	1	1	0	0	0	0	copy fasta	EXD3	chr9	137301896	137428162
EXD3_chr9_137301896_137428162	0/0	a0025	876	1	1	0	0	0	0	copy fasta	EXD3	chr9	137301896	137428162
EXD3_chr9_137301896_137428162	0/0	a0026	876	1	0	1	0	0	0	copy fasta	EXD3	chr9	137301896	137428162
EXD3_chr9_137301896_137428162	0/0	a0027	876	1	1	0	0	0	0	copy fasta	EXD3	chr9	137301896	137428162
EXD3_chr9_137301896_137428162	0/0	a0028	876	1	1	0	0	0	0	copy fasta	EXD3	chr9	137301896	137428162
EXD3_chr9_137301896_137428162	0/0	a0029	876	1	1	0	0	0	0	copy fasta	EXD3	chr9	137301896	137428162
EXD3_chr9_137301896_137428162	0/0	a0030	876	1	0	1	0	0	0	copy fasta	EXD3	chr9	137301896	137428162
EXD3_chr9_137301896_137428162	0/0	a0031	876	1	0	1	0	0	0	copy fasta	EXD3	chr9	137301896	137428162
EXO1_chr1_241843204_241894939	0/0	a0001	846	67	10	4	50	1	2	copy fasta	EXO1	chr1	241843204	241894939