JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
EXO1_chr1_241843204_241894939	0/0	a0002	846	53	14	7	24	2	6	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	a0003	846	25	0	16	6	1	2	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	a0004	846	22	0	4	17	1	0	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	a0005	846	21	7	7	1	1	5	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	a0006	846	21	3	9	6	2	1	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	a0007	846	18	1	0	16	0	1	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	a0008	846	18	9	3	2	4	0	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	a0009	846	17	4	5	6	0	2	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	a0010	846	16	8	1	6	0	1	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	a0011	846	15	10	3	2	0	0	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	1/0	a0012	846	12	10	0	0	0	1	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	a0013	846	12	0	5	7	0	0	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	a0014	846	12	0	6	0	3	3	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	a0015	846	10	4	1	5	0	0	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	a0016	846	8	0	1	6	0	1	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	a0017	846	8	2	0	0	0	6	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	a0018	846	7	1	0	5	0	1	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	a0019	846	7	0	0	5	0	2	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	a0020	846	6	0	0	3	1	2	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	a0021	846	5	0	0	5	0	0	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	a0022	846	3	3	0	0	0	0	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	a0023	846	3	0	0	2	1	0	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/1	a0024	846	3	0	0	0	0	2	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	a0025	846	2	0	2	0	0	0	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	a0026	846	2	0	2	0	0	0	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	a0027	846	2	1	0	1	0	0	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	a0028	846	2	2	0	0	0	0	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	a0029	846	2	0	1	0	1	0	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	a0030	846	1	1	0	0	0	0	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	a0031	846	1	1	0	0	0	0	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	a0032	846	1	1	0	0	0	0	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	a0033	846	1	1	0	0	0	0	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	a0034	846	1	0	0	0	0	1	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	a0035	846	1	0	0	0	0	1	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	a0036	846	1	0	0	0	0	1	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	a0037	846	1	0	0	0	0	1	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	a0038	846	1	0	0	1	0	0	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	a0039	846	1	0	1	0	0	0	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	a0040	846	1	0	0	1	0	0	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	a0041	846	1	0	1	0	0	0	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	a0042	846	1	0	1	0	0	0	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	a0043	846	1	1	0	0	0	0	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	a0044	846	1	0	0	0	0	1	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	a0045	846	1	0	0	1	0	0	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	a0046	846	1	0	0	0	0	1	copy fasta	EXO1	chr1	241843204	241894939
EXO5_chr1_40503767_40521038	0/0	a0000	0	1	0	0	1	0	0	copy fasta	EXO5	chr1	40503767	40521038
EXO5_chr1_40503767_40521038	0/0	a0001	373	186	55	33	77	5	16	copy fasta	EXO5	chr1	40503767	40521038
EXO5_chr1_40503767_40521038	1/0	a0002	373	166	29	30	85	8	13	copy fasta	EXO5	chr1	40503767	40521038
EXO5_chr1_40503767_40521038	0/1	a0003	373	30	5	9	3	3	9	copy fasta	EXO5	chr1	40503767	40521038
EXO5_chr1_40503767_40521038	0/0	a0004	268	18	0	0	18	0	0	copy fasta	EXO5	chr1	40503767	40521038