JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
EXO5_chr1_40503767_40521038	0/0	a0005	373	2	0	2	0	0	0	copy fasta	EXO5	chr1	40503767	40521038
EXO5_chr1_40503767_40521038	0/0	a0006	373	1	0	1	0	0	0	copy fasta	EXO5	chr1	40503767	40521038
EXO5_chr1_40503767_40521038	0/0	a0007	373	1	0	1	0	0	0	copy fasta	EXO5	chr1	40503767	40521038
EXO5_chr1_40503767_40521038	0/0	a0008	373	1	1	0	0	0	0	copy fasta	EXO5	chr1	40503767	40521038
EXOC1L_chr4_55814790_55842489	1/1	a0001	172	395	92	78	171	12	40	copy fasta	EXOC1L	chr4	55814790	55842489
EXOC1L_chr4_55814790_55842489	0/0	a0002	172	8	4	2	0	0	2	copy fasta	EXOC1L	chr4	55814790	55842489
EXOC1L_chr4_55814790_55842489	0/0	a0003	172	1	0	0	1	0	0	copy fasta	EXOC1L	chr4	55814790	55842489
EXOC1_chr4_55848648_55910086	1/1	a0001	894	370	86	71	163	10	38	copy fasta	EXOC1	chr4	55848648	55910086
EXOC1_chr4_55848648_55910086	0/0	a0002	894	2	2	0	0	0	0	copy fasta	EXOC1	chr4	55848648	55910086
EXOC1_chr4_55848648_55910086	0/0	a0003	894	2	0	0	0	0	2	copy fasta	EXOC1	chr4	55848648	55910086
EXOC1_chr4_55848648_55910086	0/0	a0004	894	1	0	1	0	0	0	copy fasta	EXOC1	chr4	55848648	55910086
EXOC1_chr4_55848648_55910086	0/0	a0005	894	1	0	0	1	0	0	copy fasta	EXOC1	chr4	55848648	55910086
EXOC2_chr6_480154_698139	1/1	a0001	924	258	78	35	101	12	30	copy fasta	EXOC2	chr6	480154	698139
EXOC2_chr6_480154_698139	0/0	a0002	924	4	4	0	0	0	0	copy fasta	EXOC2	chr6	480154	698139
EXOC2_chr6_480154_698139	0/0	a0003	924	4	0	0	4	0	0	copy fasta	EXOC2	chr6	480154	698139
EXOC2_chr6_480154_698139	0/0	a0004	924	3	3	0	0	0	0	copy fasta	EXOC2	chr6	480154	698139
EXOC2_chr6_480154_698139	0/0	a0005	924	1	0	1	0	0	0	copy fasta	EXOC2	chr6	480154	698139
EXOC2_chr6_480154_698139	0/0	a0006	924	1	1	0	0	0	0	copy fasta	EXOC2	chr6	480154	698139
EXOC2_chr6_480154_698139	0/0	a0007	924	1	0	0	1	0	0	copy fasta	EXOC2	chr6	480154	698139
EXOC3L1_chr16_67179379_67195136	1/1	a0001	746	227	37	57	101	10	20	copy fasta	EXOC3L1	chr16	67179379	67195136
EXOC3L1_chr16_67179379_67195136	0/0	a0002	746	64	45	5	4	1	9	copy fasta	EXOC3L1	chr16	67179379	67195136
EXOC3L1_chr16_67179379_67195136	0/0	a0003	746	12	12	0	0	0	0	copy fasta	EXOC3L1	chr16	67179379	67195136
EXOC3L1_chr16_67179379_67195136	0/0	a0004	746	2	0	0	2	0	0	copy fasta	EXOC3L1	chr16	67179379	67195136
EXOC3L1_chr16_67179379_67195136	0/0	a0005	746	2	1	0	0	1	0	copy fasta	EXOC3L1	chr16	67179379	67195136
EXOC3L1_chr16_67179379_67195136	0/0	a0006	746	2	0	0	2	0	0	copy fasta	EXOC3L1	chr16	67179379	67195136
EXOC3L1_chr16_67179379_67195136	0/0	a0007	746	1	0	1	0	0	0	copy fasta	EXOC3L1	chr16	67179379	67195136
EXOC3L1_chr16_67179379_67195136	0/0	a0008	746	1	1	0	0	0	0	copy fasta	EXOC3L1	chr16	67179379	67195136
EXOC3L1_chr16_67179379_67195136	0/0	a0009	468	1	0	0	0	0	1	copy fasta	EXOC3L1	chr16	67179379	67195136
EXOC3L1_chr16_67179379_67195136	0/0	a0010	746	1	0	1	0	0	0	copy fasta	EXOC3L1	chr16	67179379	67195136
EXOC3L1_chr16_67179379_67195136	0/0	a0011	746	1	0	0	1	0	0	copy fasta	EXOC3L1	chr16	67179379	67195136
EXOC3L2_chr19_45207370_45250407	1/1	a0001	802	258	53	55	112	12	24	copy fasta	EXOC3L2	chr19	45207370	45250407
EXOC3L2_chr19_45207370_45250407	0/0	a0002	802	42	12	3	20	1	6	copy fasta	EXOC3L2	chr19	45207370	45250407
EXOC3L2_chr19_45207370_45250407	0/0	a0003	802	28	9	9	0	2	8	copy fasta	EXOC3L2	chr19	45207370	45250407
EXOC3L2_chr19_45207370_45250407	0/0	a0004	802	9	9	0	0	0	0	copy fasta	EXOC3L2	chr19	45207370	45250407
EXOC3L2_chr19_45207370_45250407	0/0	a0005	802	4	0	0	4	0	0	copy fasta	EXOC3L2	chr19	45207370	45250407
EXOC3L2_chr19_45207370_45250407	0/0	a0006	802	4	3	0	0	0	1	copy fasta	EXOC3L2	chr19	45207370	45250407
EXOC3L2_chr19_45207370_45250407	0/0	a0007	802	2	2	0	0	0	0	copy fasta	EXOC3L2	chr19	45207370	45250407
EXOC3L2_chr19_45207370_45250407	0/0	a0008	802	1	1	0	0	0	0	copy fasta	EXOC3L2	chr19	45207370	45250407
EXOC3L2_chr19_45207370_45250407	0/0	a0009	802	1	0	0	0	1	0	copy fasta	EXOC3L2	chr19	45207370	45250407
EXOC3L2_chr19_45207370_45250407	0/0	a0010	802	1	0	0	0	0	1	copy fasta	EXOC3L2	chr19	45207370	45250407
EXOC3L2_chr19_45207370_45250407	0/0	a0011	802	1	0	0	1	0	0	copy fasta	EXOC3L2	chr19	45207370	45250407
EXOC3L2_chr19_45207370_45250407	0/0	a0012	802	1	1	0	0	0	0	copy fasta	EXOC3L2	chr19	45207370	45250407
EXOC3L2_chr19_45207370_45250407	0/0	a0013	802	1	0	1	0	0	0	copy fasta	EXOC3L2	chr19	45207370	45250407
EXOC3L2_chr19_45207370_45250407	0/0	a0014	802	1	0	1	0	0	0	copy fasta	EXOC3L2	chr19	45207370	45250407
EXOC3L2_chr19_45207370_45250407	0/0	a0015	802	1	0	1	0	0	0	copy fasta	EXOC3L2	chr19	45207370	45250407
EXOC3L2_chr19_45207370_45250407	0/0	a0016	802	1	0	0	1	0	0	copy fasta	EXOC3L2	chr19	45207370	45250407
EXOC3L4_chr14_103089725_103115559	0/0	a0000	0	1	0	0	1	0	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	a0001	722	76	27	20	28	1	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	a0002	722	62	19	5	30	2	6	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	a0003	722	62	0	14	28	3	17	copy fasta	EXOC3L4	chr14	103089725	103115559