JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
EXOC3L4_chr14_103089725_103115559	0/0	a0004	722	55	6	20	8	7	14	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	a0005	722	50	1	11	31	0	7	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	a0006	722	12	4	4	0	1	3	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	a0007	722	9	8	1	0	0	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	a0008	722	8	6	2	0	0	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	1/0	a0009	722	6	0	1	2	1	1	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	a0010	722	6	0	0	6	0	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	a0011	722	6	0	0	6	0	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	a0012	722	6	0	0	6	0	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	a0013	722	4	4	0	0	0	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	a0014	722	3	3	0	0	0	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	a0015	722	3	3	0	0	0	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	a0016	722	3	3	0	0	0	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	a0017	722	2	2	0	0	0	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	a0018	722	2	0	0	2	0	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	a0019	722	2	0	1	1	0	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	a0020	722	2	0	0	2	0	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	a0021	722	1	1	0	0	0	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	a0022	722	1	1	0	0	0	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	a0023	722	1	0	1	0	0	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	a0024	722	1	1	0	0	0	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	a0025	722	1	0	0	0	1	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	a0026	722	1	1	0	0	0	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	a0027	722	1	0	0	1	0	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	a0028	722	1	0	0	0	0	1	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	a0029	722	1	0	0	1	0	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	a0030	722	1	1	0	0	0	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	a0031	722	1	0	0	1	0	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	a0032	722	1	1	0	0	0	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	a0033	722	1	0	0	1	0	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	a0034	722	1	0	0	1	0	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	a0035	722	1	0	0	1	0	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	a0036	722	1	0	0	1	0	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	a0037	722	1	1	0	0	0	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/1	a0038	722	1	0	0	0	0	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	a0039	722	1	1	0	0	0	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	a0040	722	1	1	0	0	0	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	a0041	722	1	0	0	0	0	1	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	a0042	722	1	0	0	1	0	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	a0043	717	1	0	0	1	0	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	a0044	722	1	1	0	0	0	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3_chr5_438176_472290	1/1	a0001	745	406	89	76	172	18	49	copy fasta	EXOC3	chr5	438176	472290
EXOC3_chr5_438176_472290	0/0	a0002	745	9	0	4	5	0	0	copy fasta	EXOC3	chr5	438176	472290
EXOC3_chr5_438176_472290	0/0	a0003	745	1	1	0	0	0	0	copy fasta	EXOC3	chr5	438176	472290
EXOC3_chr5_438176_472290	0/0	a0004	745	1	0	0	1	0	0	copy fasta	EXOC3	chr5	438176	472290
EXOC3_chr5_438176_472290	0/0	a0005	745	1	0	0	0	0	1	copy fasta	EXOC3	chr5	438176	472290
EXOC4_chr7_133248078_134070761	1/1	a0001	974	102	44	20	28	4	4	copy fasta	EXOC4	chr7	133248078	134070761
EXOC5_chr14_57195507_57273905	1/1	a0001	708	209	79	48	58	4	18	copy fasta	EXOC5	chr14	57195507	57273905
EXOC5_chr14_57195507_57273905	0/0	a0002	708	5	5	0	0	0	0	copy fasta	EXOC5	chr14	57195507	57273905
EXOC6B_chr2_72170984_72831033	1/1	a0001	811	100	58	22	2	8	8	copy fasta	EXOC6B	chr2	72170984	72831033