Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
AFP_chr4_73431221_73461174	0/0	a0011	609	1	1	0	0	0	0	copy fasta	AFP	chr4	73431221	73461174
AFTPH_chr2_64519328_64598005	1/1	a0001	936	267	41	57	125	11	31	copy fasta	AFTPH	chr2	64519328	64598005
AFTPH_chr2_64519328_64598005	0/0	a0002	936	85	36	0	45	1	3	copy fasta	AFTPH	chr2	64519328	64598005
AFTPH_chr2_64519328_64598005	0/0	a0003	936	5	5	0	0	0	0	copy fasta	AFTPH	chr2	64519328	64598005
AFTPH_chr2_64519328_64598005	0/0	a0004	936	4	0	0	4	0	0	copy fasta	AFTPH	chr2	64519328	64598005
AFTPH_chr2_64519328_64598005	0/0	a0005	936	3	1	0	2	0	0	copy fasta	AFTPH	chr2	64519328	64598005
AFTPH_chr2_64519328_64598005	0/0	a0006	936	2	0	0	2	0	0	copy fasta	AFTPH	chr2	64519328	64598005
AFTPH_chr2_64519328_64598005	0/0	a0007	936	1	0	0	0	0	1	copy fasta	AFTPH	chr2	64519328	64598005
AFTPH_chr2_64519328_64598005	0/0	a0008	936	1	1	0	0	0	0	copy fasta	AFTPH	chr2	64519328	64598005
AFTPH_chr2_64519328_64598005	0/0	a0009	936	1	0	1	0	0	0	copy fasta	AFTPH	chr2	64519328	64598005
AFTPH_chr2_64519328_64598005	0/0	a0010	936	1	1	0	0	0	0	copy fasta	AFTPH	chr2	64519328	64598005
AFTPH_chr2_64519328_64598005	0/0	a0011	936	1	0	0	0	0	1	copy fasta	AFTPH	chr2	64519328	64598005
AFTPH_chr2_64519328_64598005	0/0	a0012	936	1	1	0	0	0	0	copy fasta	AFTPH	chr2	64519328	64598005
AGAP1_chr2_235489043_236136793	0/0	a0001	857	81	63	8	8	0	2	copy fasta	AGAP1	chr2	235489043	236136793
AGAP1_chr2_235489043_236136793	0/0	a0002	857	16	2	10	2	0	2	copy fasta	AGAP1	chr2	235489043	236136793
AGAP1_chr2_235489043_236136793	0/0	a0003	857	1	1	0	0	0	0	copy fasta	AGAP1	chr2	235489043	236136793
AGAP2_chr12_57720197_57743742	1/1	a0001	1192	339	81	66	135	12	43	copy fasta	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	a0002	273	11	1	4	5	0	1	copy fasta	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	a0003	1192	8	8	0	0	0	0	copy fasta	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	a0004	1192	8	0	0	8	0	0	copy fasta	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	a0005	1192	6	4	2	0	0	0	copy fasta	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	a0006	1192	2	0	0	2	0	0	copy fasta	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	a0007	1192	1	1	0	0	0	0	copy fasta	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	a0008	1192	1	0	0	1	0	0	copy fasta	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	a0009	1192	1	1	0	0	0	0	copy fasta	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	a0010	1192	1	0	0	0	1	0	copy fasta	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	a0011	1192	1	1	0	0	0	0	copy fasta	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	a0012	1192	1	0	0	0	1	0	copy fasta	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	a0013	1192	1	0	0	1	0	0	copy fasta	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	a0014	1192	1	1	0	0	0	0	copy fasta	AGAP2	chr12	57720197	57743742
AGAP3_chr7_151081475_151149434	0/1	a0001	912	347	93	64	137	15	37	copy fasta	AGAP3	chr7	151081475	151149434
AGAP3_chr7_151081475_151149434	1/0	a0002	911	1	0	0	0	0	0	copy fasta	AGAP3	chr7	151081475	151149434
AGAP3_chr7_151081475_151149434	0/0	a0003	266	1	0	0	0	0	1	copy fasta	AGAP3	chr7	151081475	151149434
AGAP3_chr7_151081475_151149434	0/0	a0004	912	1	0	0	1	0	0	copy fasta	AGAP3	chr7	151081475	151149434
AGAP3_chr7_151081475_151149434	0/0	a0005	912	1	1	0	0	0	0	copy fasta	AGAP3	chr7	151081475	151149434
AGAP3_chr7_151081475_151149434	0/0	a0006	912	1	0	0	0	1	0	copy fasta	AGAP3	chr7	151081475	151149434
AGAP3_chr7_151081475_151149434	0/0	a0007	912	1	0	0	1	0	0	copy fasta	AGAP3	chr7	151081475	151149434
AGAP3_chr7_151081475_151149434	0/0	a0008	912	1	0	0	1	0	0	copy fasta	AGAP3	chr7	151081475	151149434
AGAP4_chr10_45820594_45852500	0/0	a0001	686	135	19	45	58	3	10	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	a0002	686	110	5	8	78	1	18	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	a0003	686	21	5	5	6	0	5	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	a0004	686	14	12	2	0	0	0	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	a0005	686	14	12	2	0	0	0	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	a0006	686	13	12	1	0	0	0	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/1	a0007	686	9	0	1	2	1	4	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	a0008	686	8	8	0	0	0	0	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	a0009	686	6	0	0	6	0	0	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	1/0	a0010	686	6	3	2	0	0	0	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	a0011	686	6	0	3	0	3	0	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	a0012	686	5	0	4	0	1	0	copy fasta	AGAP4	chr10	45820594	45852500