JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
EXOC6B_chr2_72170984_72831033	0/0	a0002	811	3	3	0	0	0	0	copy fasta	EXOC6B	chr2	72170984	72831033
EXOC6B_chr2_72170984_72831033	0/0	a0003	811	1	1	0	0	0	0	copy fasta	EXOC6B	chr2	72170984	72831033
EXOC6_chr10_92843520_93064490	0/1	a0001	804	242	72	37	99	7	26	copy fasta	EXOC6	chr10	92843520	93064490
EXOC6_chr10_92843520_93064490	1/0	a0002	804	20	0	10	1	3	5	copy fasta	EXOC6	chr10	92843520	93064490
EXOC6_chr10_92843520_93064490	0/0	a0003	804	18	7	8	1	1	1	copy fasta	EXOC6	chr10	92843520	93064490
EXOC6_chr10_92843520_93064490	0/0	a0004	804	4	4	0	0	0	0	copy fasta	EXOC6	chr10	92843520	93064490
EXOC6_chr10_92843520_93064490	0/0	a0005	804	2	0	1	0	1	0	copy fasta	EXOC6	chr10	92843520	93064490
EXOC6_chr10_92843520_93064490	0/0	a0006	804	1	0	0	1	0	0	copy fasta	EXOC6	chr10	92843520	93064490
EXOC6_chr10_92843520_93064490	0/0	a0007	804	1	1	0	0	0	0	copy fasta	EXOC6	chr10	92843520	93064490
EXOC7_chr17_76076016_76108787	1/1	a0001	684	355	88	64	152	16	33	copy fasta	EXOC7	chr17	76076016	76108787
EXOC7_chr17_76076016_76108787	0/0	a0002	684	2	1	0	0	0	1	copy fasta	EXOC7	chr17	76076016	76108787
EXOC7_chr17_76076016_76108787	0/0	a0003	684	2	0	0	2	0	0	copy fasta	EXOC7	chr17	76076016	76108787
EXOC7_chr17_76076016_76108787	0/0	a0004	684	2	0	2	0	0	0	copy fasta	EXOC7	chr17	76076016	76108787
EXOC7_chr17_76076016_76108787	0/0	a0005	684	1	0	0	1	0	0	copy fasta	EXOC7	chr17	76076016	76108787
EXOC7_chr17_76076016_76108787	0/0	a0006	684	1	0	0	1	0	0	copy fasta	EXOC7	chr17	76076016	76108787
EXOC7_chr17_76076016_76108787	0/0	a0007	684	1	1	0	0	0	0	copy fasta	EXOC7	chr17	76076016	76108787
EXOC7_chr17_76076016_76108787	0/0	a0008	684	1	0	0	1	0	0	copy fasta	EXOC7	chr17	76076016	76108787
EXOC7_chr17_76076016_76108787	0/0	a0009	684	1	0	0	1	0	0	copy fasta	EXOC7	chr17	76076016	76108787
EXOC8_chr1_231327753_231342852	1/1	a0001	725	371	70	60	180	15	44	copy fasta	EXOC8	chr1	231327753	231342852
EXOC8_chr1_231327753_231342852	0/0	a0002	725	6	6	0	0	0	0	copy fasta	EXOC8	chr1	231327753	231342852
EXOC8_chr1_231327753_231342852	0/0	a0003	727	5	5	0	0	0	0	copy fasta	EXOC8	chr1	231327753	231342852
EXOC8_chr1_231327753_231342852	0/0	a0004	725	3	3	0	0	0	0	copy fasta	EXOC8	chr1	231327753	231342852
EXOC8_chr1_231327753_231342852	0/0	a0005	725	1	0	0	0	1	0	copy fasta	EXOC8	chr1	231327753	231342852
EXOC8_chr1_231327753_231342852	0/0	a0006	725	1	0	0	1	0	0	copy fasta	EXOC8	chr1	231327753	231342852
EXOC8_chr1_231327753_231342852	0/0	a0007	725	1	0	0	1	0	0	copy fasta	EXOC8	chr1	231327753	231342852
EXOG_chr3_38491340_38531303	1/1	a0001	368	408	92	74	190	10	40	copy fasta	EXOG	chr3	38491340	38531303
EXOG_chr3_38491340_38531303	0/0	a0002	92	1	0	0	1	0	0	copy fasta	EXOG	chr3	38491340	38531303
EXOG_chr3_38491340_38531303	0/0	a0003	368	1	0	0	1	0	0	copy fasta	EXOG	chr3	38491340	38531303
EXOG_chr3_38491340_38531303	0/0	a0004	368	1	0	0	1	0	0	copy fasta	EXOG	chr3	38491340	38531303
EXOG_chr3_38491340_38531303	0/0	a0005	368	1	0	0	1	0	0	copy fasta	EXOG	chr3	38491340	38531303
EXOSC10_chr1_11061618_11104869	1/1	a0001	885	259	92	47	73	12	33	copy fasta	EXOSC10	chr1	11061618	11104869
EXOSC10_chr1_11061618_11104869	0/0	a0002	885	17	0	6	6	0	5	copy fasta	EXOSC10	chr1	11061618	11104869
EXOSC10_chr1_11061618_11104869	0/0	a0003	885	2	0	0	2	0	0	copy fasta	EXOSC10	chr1	11061618	11104869
EXOSC10_chr1_11061618_11104869	0/0	a0004	885	1	1	0	0	0	0	copy fasta	EXOSC10	chr1	11061618	11104869
EXOSC10_chr1_11061618_11104869	0/0	a0005	885	1	0	0	1	0	0	copy fasta	EXOSC10	chr1	11061618	11104869
EXOSC10_chr1_11061618_11104869	0/0	a0006	885	1	0	0	1	0	0	copy fasta	EXOSC10	chr1	11061618	11104869
EXOSC10_chr1_11061618_11104869	0/0	a0007	885	1	1	0	0	0	0	copy fasta	EXOSC10	chr1	11061618	11104869
EXOSC10_chr1_11061618_11104869	0/0	a0008	885	1	0	1	0	0	0	copy fasta	EXOSC10	chr1	11061618	11104869
EXOSC10_chr1_11061618_11104869	0/0	a0009	885	1	0	0	1	0	0	copy fasta	EXOSC10	chr1	11061618	11104869
EXOSC1_chr10_97430909_97451006	1/1	a0001	195	429	90	78	199	14	46	copy fasta	EXOSC1	chr10	97430909	97451006
EXOSC1_chr10_97430909_97451006	0/0	a0002	195	1	0	0	1	0	0	copy fasta	EXOSC1	chr10	97430909	97451006
EXOSC2_chr9_130688780_130709892	1/1	a0001	293	422	96	80	180	18	46	copy fasta	EXOSC2	chr9	130688780	130709892
EXOSC2_chr9_130688780_130709892	0/0	a0002	293	2	0	2	0	0	0	copy fasta	EXOSC2	chr9	130688780	130709892
EXOSC2_chr9_130688780_130709892	0/0	a0003	293	2	0	0	2	0	0	copy fasta	EXOSC2	chr9	130688780	130709892
EXOSC3_chr9_37774714_37790064	1/0	a0001	275	425	84	78	206	11	45	copy fasta	EXOSC3	chr9	37774714	37790064
EXOSC3_chr9_37774714_37790064	0/1	a0002	275	4	0	1	0	1	1	copy fasta	EXOSC3	chr9	37774714	37790064
EXOSC3_chr9_37774714_37790064	0/0	a0003	275	1	0	1	0	0	0	copy fasta	EXOSC3	chr9	37774714	37790064
EXOSC3_chr9_37774714_37790064	0/0	a0004	275	1	1	0	0	0	0	copy fasta	EXOSC3	chr9	37774714	37790064
EXOSC3_chr9_37774714_37790064	0/0	a0005	275	1	1	0	0	0	0	copy fasta	EXOSC3	chr9	37774714	37790064
EXOSC4_chr8_144073672_144085648	1/1	a0001	245	296	92	69	88	10	35	copy fasta	EXOSC4	chr8	144073672	144085648