JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
EXOSC4_chr8_144073672_144085648	0/0	a0002	245	2	0	2	0	0	0	copy fasta	EXOSC4	chr8	144073672	144085648
EXOSC4_chr8_144073672_144085648	0/0	a0003	245	2	2	0	0	0	0	copy fasta	EXOSC4	chr8	144073672	144085648
EXOSC4_chr8_144073672_144085648	0/0	a0004	245	1	0	0	0	0	1	copy fasta	EXOSC4	chr8	144073672	144085648
EXOSC4_chr8_144073672_144085648	0/0	a0005	245	1	0	1	0	0	0	copy fasta	EXOSC4	chr8	144073672	144085648
EXOSC5_chr19_41381374_41402359	0/1	a0001	235	239	71	38	87	12	30	copy fasta	EXOSC5	chr19	41381374	41402359
EXOSC5_chr19_41381374_41402359	1/0	a0002	235	156	20	30	87	4	14	copy fasta	EXOSC5	chr19	41381374	41402359
EXOSC5_chr19_41381374_41402359	0/0	a0003	235	1	1	0	0	0	0	copy fasta	EXOSC5	chr19	41381374	41402359
EXOSC6_chr16_70241778_70256940	1/1	a0001	272	389	64	73	191	14	45	copy fasta	EXOSC6	chr16	70241778	70256940
EXOSC6_chr16_70241778_70256940	0/0	a0002	272	24	23	1	0	0	0	copy fasta	EXOSC6	chr16	70241778	70256940
EXOSC6_chr16_70241778_70256940	0/0	a0003	272	3	3	0	0	0	0	copy fasta	EXOSC6	chr16	70241778	70256940
EXOSC6_chr16_70241778_70256940	0/0	a0004	272	1	0	0	1	0	0	copy fasta	EXOSC6	chr16	70241778	70256940
EXOSC6_chr16_70241778_70256940	0/0	a0005	272	1	1	0	0	0	0	copy fasta	EXOSC6	chr16	70241778	70256940
EXOSC6_chr16_70241778_70256940	0/0	a0006	272	1	1	0	0	0	0	copy fasta	EXOSC6	chr16	70241778	70256940
EXOSC6_chr16_70241778_70256940	0/0	a0007	272	1	0	0	0	0	1	copy fasta	EXOSC6	chr16	70241778	70256940
EXOSC7_chr3_44971244_45016471	0/0	a0000	0	1	0	0	1	0	0	copy fasta	EXOSC7	chr3	44971244	45016471
EXOSC7_chr3_44971244_45016471	0/0	a0001	291	211	62	35	84	7	23	copy fasta	EXOSC7	chr3	44971244	45016471
EXOSC7_chr3_44971244_45016471	1/1	a0002	291	92	22	29	24	7	8	copy fasta	EXOSC7	chr3	44971244	45016471
EXOSC7_chr3_44971244_45016471	0/0	a0003	291	20	0	7	7	2	4	copy fasta	EXOSC7	chr3	44971244	45016471
EXOSC7_chr3_44971244_45016471	0/0	a0004	291	13	10	3	0	0	0	copy fasta	EXOSC7	chr3	44971244	45016471
EXOSC7_chr3_44971244_45016471	0/0	a0005	291	1	0	0	0	0	1	copy fasta	EXOSC7	chr3	44971244	45016471
EXOSC7_chr3_44971244_45016471	0/0	a0006	291	1	0	0	0	0	1	copy fasta	EXOSC7	chr3	44971244	45016471
EXOSC7_chr3_44971244_45016471	0/0	a0007	291	1	0	0	0	0	1	copy fasta	EXOSC7	chr3	44971244	45016471
EXOSC8_chr13_36995786_37014614	1/1	a0001	276	379	90	75	161	12	39	copy fasta	EXOSC8	chr13	36995786	37014614
EXOSC8_chr13_36995786_37014614	0/0	a0002	276	4	0	0	4	0	0	copy fasta	EXOSC8	chr13	36995786	37014614
EXOSC8_chr13_36995786_37014614	0/0	a0003	276	3	0	3	0	0	0	copy fasta	EXOSC8	chr13	36995786	37014614
EXOSC8_chr13_36995786_37014614	0/0	a0004	276	2	0	0	0	2	0	copy fasta	EXOSC8	chr13	36995786	37014614
EXOSC8_chr13_36995786_37014614	0/0	a0005	276	1	0	0	0	0	1	copy fasta	EXOSC8	chr13	36995786	37014614
EXOSC8_chr13_36995786_37014614	0/0	a0006	276	1	0	0	1	0	0	copy fasta	EXOSC8	chr13	36995786	37014614
EXOSC9_chr4_121796323_121822021	1/1	a0001	439	355	55	71	171	12	44	copy fasta	EXOSC9	chr4	121796323	121822021
EXOSC9_chr4_121796323_121822021	0/0	a0002	439	32	24	7	1	0	0	copy fasta	EXOSC9	chr4	121796323	121822021
EXOSC9_chr4_121796323_121822021	0/0	a0003	439	11	9	2	0	0	0	copy fasta	EXOSC9	chr4	121796323	121822021
EXOSC9_chr4_121796323_121822021	0/0	a0004	439	1	0	0	1	0	0	copy fasta	EXOSC9	chr4	121796323	121822021
EXOSC9_chr4_121796323_121822021	0/0	a0005	439	1	0	0	1	0	0	copy fasta	EXOSC9	chr4	121796323	121822021
EXPH5_chr11_108500435_108598768	1/0	a0001	1989	62	14	16	16	2	13	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	a0002	1989	39	16	4	16	0	3	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/1	a0003	1989	37	6	16	6	4	4	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	a0004	1989	32	1	4	24	1	2	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	a0005	1989	29	2	4	15	1	7	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	a0006	1989	27	1	7	16	0	3	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	a0007	1989	13	10	1	1	0	1	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	a0008	1989	7	6	1	0	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	a0009	1989	7	0	0	4	0	3	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	a0010	1989	7	7	0	0	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	a0011	1989	6	2	0	2	0	2	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	a0012	1989	5	0	2	2	1	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	a0013	1989	4	3	1	0	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	a0014	1989	3	0	2	1	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	a0015	1989	3	3	0	0	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	a0016	1989	3	0	0	3	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	a0017	1989	3	0	0	3	0	0	copy fasta	EXPH5	chr11	108500435	108598768