JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
EXPH5_chr11_108500435_108598768	0/0	a0018	1989	2	0	1	1	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	a0019	1989	2	0	0	2	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	a0020	1989	2	1	1	0	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	a0021	1989	2	2	0	0	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	a0022	1989	2	2	0	0	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	a0023	1989	1	1	0	0	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	a0024	1989	1	0	0	0	0	1	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	a0025	1989	1	1	0	0	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	a0026	1989	1	0	0	1	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	a0027	1989	1	0	0	1	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	a0028	1989	1	0	0	1	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	a0029	1989	1	0	1	0	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	a0030	1989	1	1	0	0	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	a0031	1989	1	1	0	0	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	a0032	1989	1	1	0	0	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	a0033	1989	1	1	0	0	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	a0034	1989	1	0	1	0	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	a0035	1989	1	1	0	0	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	a0036	1989	1	1	0	0	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	a0037	1989	1	0	0	0	0	1	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	a0038	1989	1	0	0	0	1	0	copy fasta	EXPH5	chr11	108500435	108598768
EXPH5_chr11_108500435_108598768	0/0	a0039	1989	1	0	0	1	0	0	copy fasta	EXPH5	chr11	108500435	108598768
EXT1_chr8_117789490_118116826	0/0	a0001	746	188	71	19	66	6	26	copy fasta	EXT1	chr8	117789490	118116826
EXT1_chr8_117789490_118116826	0/0	a0002	746	1	1	0	0	0	0	copy fasta	EXT1	chr8	117789490	118116826
EXT1_chr8_117789490_118116826	0/0	a0003	746	1	0	1	0	0	0	copy fasta	EXT1	chr8	117789490	118116826
EXT2_chr11_44090678_44256962	1/1	a0001	718	323	72	46	161	10	32	copy fasta	EXT2	chr11	44090678	44256962
EXT2_chr11_44090678_44256962	0/0	a0002	718	4	4	0	0	0	0	copy fasta	EXT2	chr11	44090678	44256962
EXT2_chr11_44090678_44256962	0/0	a0003	718	4	4	0	0	0	0	copy fasta	EXT2	chr11	44090678	44256962
EXT2_chr11_44090678_44256962	0/0	a0004	718	1	1	0	0	0	0	copy fasta	EXT2	chr11	44090678	44256962
EXT2_chr11_44090678_44256962	0/0	a0005	718	1	1	0	0	0	0	copy fasta	EXT2	chr11	44090678	44256962
EXT2_chr11_44090678_44256962	0/0	a0006	718	1	0	0	1	0	0	copy fasta	EXT2	chr11	44090678	44256962
EXTL1_chr1_26016775_26041464	0/1	a0001	676	204	15	47	104	12	25	copy fasta	EXTL1	chr1	26016775	26041464
EXTL1_chr1_26016775_26041464	1/0	a0002	676	133	54	22	42	2	12	copy fasta	EXTL1	chr1	26016775	26041464
EXTL1_chr1_26016775_26041464	0/0	a0003	676	17	16	1	0	0	0	copy fasta	EXTL1	chr1	26016775	26041464
EXTL1_chr1_26016775_26041464	0/0	a0004	676	11	9	2	0	0	0	copy fasta	EXTL1	chr1	26016775	26041464
EXTL1_chr1_26016775_26041464	0/0	a0005	676	2	1	0	1	0	0	copy fasta	EXTL1	chr1	26016775	26041464
EXTL1_chr1_26016775_26041464	0/0	a0006	676	1	1	0	0	0	0	copy fasta	EXTL1	chr1	26016775	26041464
EXTL1_chr1_26016775_26041464	0/0	a0007	676	1	1	0	0	0	0	copy fasta	EXTL1	chr1	26016775	26041464
EXTL1_chr1_26016775_26041464	0/0	a0008	676	1	1	0	0	0	0	copy fasta	EXTL1	chr1	26016775	26041464
EXTL1_chr1_26016775_26041464	0/0	a0009	676	1	0	0	1	0	0	copy fasta	EXTL1	chr1	26016775	26041464
EXTL1_chr1_26016775_26041464	0/0	a0010	676	1	0	0	0	0	1	copy fasta	EXTL1	chr1	26016775	26041464
EXTL2_chr1_100867391_100899842	1/1	a0001	330	405	90	80	169	16	48	copy fasta	EXTL2	chr1	100867391	100899842
EXTL2_chr1_100867391_100899842	0/0	a0002	330	3	3	0	0	0	0	copy fasta	EXTL2	chr1	100867391	100899842
EXTL2_chr1_100867391_100899842	0/0	a0003	330	1	0	0	1	0	0	copy fasta	EXTL2	chr1	100867391	100899842
EXTL2_chr1_100867391_100899842	0/0	a0004	330	1	1	0	0	0	0	copy fasta	EXTL2	chr1	100867391	100899842
EXTL3_chr8_28696501_28760599	1/1	a0001	919	365	74	70	179	16	24	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	a0002	919	10	10	0	0	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	a0003	919	2	0	0	2	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	a0004	919	1	0	0	1	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EXTL3_chr8_28696501_28760599	0/0	a0005	919	1	1	0	0	0	0	copy fasta	EXTL3	chr8	28696501	28760599