JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
EXTL3_chr8_28696501_28760599	0/0	a0006	919	1	1	0	0	0	0	copy fasta	EXTL3	chr8	28696501	28760599
EYA1_chr8_71192433_71367069	1/1	a0001	592	211	58	34	77	8	32	copy fasta	EYA1	chr8	71192433	71367069
EYA1_chr8_71192433_71367069	0/0	a0002	592	19	18	1	0	0	0	copy fasta	EYA1	chr8	71192433	71367069
EYA1_chr8_71192433_71367069	0/0	a0003	592	1	0	0	1	0	0	copy fasta	EYA1	chr8	71192433	71367069
EYA1_chr8_71192433_71367069	0/0	a0004	592	1	0	1	0	0	0	copy fasta	EYA1	chr8	71192433	71367069
EYA2_chr20_46889843_47193844	1/1	a0001	538	228	70	38	92	2	24	copy fasta	EYA2	chr20	46889843	47193844
EYA2_chr20_46889843_47193844	0/0	a0002	538	3	3	0	0	0	0	copy fasta	EYA2	chr20	46889843	47193844
EYA2_chr20_46889843_47193844	0/0	a0003	538	2	2	0	0	0	0	copy fasta	EYA2	chr20	46889843	47193844
EYA2_chr20_46889843_47193844	0/0	a0004	538	2	2	0	0	0	0	copy fasta	EYA2	chr20	46889843	47193844
EYA2_chr20_46889843_47193844	0/0	a0005	538	2	2	0	0	0	0	copy fasta	EYA2	chr20	46889843	47193844
EYA2_chr20_46889843_47193844	0/0	a0006	538	1	1	0	0	0	0	copy fasta	EYA2	chr20	46889843	47193844
EYA3_chr1_27965344_28093610	1/1	a0001	573	388	85	67	186	14	34	copy fasta	EYA3	chr1	27965344	28093610
EYA3_chr1_27965344_28093610	0/0	a0002	573	2	2	0	0	0	0	copy fasta	EYA3	chr1	27965344	28093610
EYA3_chr1_27965344_28093610	0/0	a0003	573	1	1	0	0	0	0	copy fasta	EYA3	chr1	27965344	28093610
EYA3_chr1_27965344_28093610	0/0	a0004	573	1	0	1	0	0	0	copy fasta	EYA3	chr1	27965344	28093610
EYA4_chr6_133236357_133537128	1/1	a0001	639	152	33	30	66	5	16	copy fasta	EYA4	chr6	133236357	133537128
EYA4_chr6_133236357_133537128	0/0	a0002	639	110	47	12	36	1	14	copy fasta	EYA4	chr6	133236357	133537128
EYA4_chr6_133236357_133537128	0/0	a0003	639	2	2	0	0	0	0	copy fasta	EYA4	chr6	133236357	133537128
EYS_chr6_63714980_65712226	0/0	a0001	3144	2	2	0	0	0	0	copy fasta	EYS	chr6	63714980	65712226
EYS_chr6_63714980_65712226	0/0	a0002	3144	2	2	0	0	0	0	copy fasta	EYS	chr6	63714980	65712226
EYS_chr6_63714980_65712226	0/0	a0003	3144	2	1	1	0	0	0	copy fasta	EYS	chr6	63714980	65712226
EYS_chr6_63714980_65712226	0/0	a0004	3144	1	1	0	0	0	0	copy fasta	EYS	chr6	63714980	65712226
EYS_chr6_63714980_65712226	0/0	a0005	3144	1	1	0	0	0	0	copy fasta	EYS	chr6	63714980	65712226
EYS_chr6_63714980_65712226	0/0	a0006	3144	1	1	0	0	0	0	copy fasta	EYS	chr6	63714980	65712226
EYS_chr6_63714980_65712226	0/0	a0007	3144	1	1	0	0	0	0	copy fasta	EYS	chr6	63714980	65712226
EYS_chr6_63714980_65712226	0/0	a0008	3144	1	1	0	0	0	0	copy fasta	EYS	chr6	63714980	65712226
EYS_chr6_63714980_65712226	0/0	a0009	3144	1	1	0	0	0	0	copy fasta	EYS	chr6	63714980	65712226
EYS_chr6_63714980_65712226	0/0	a0010	3144	1	1	0	0	0	0	copy fasta	EYS	chr6	63714980	65712226
EYS_chr6_63714980_65712226	0/0	a0011	3144	1	1	0	0	0	0	copy fasta	EYS	chr6	63714980	65712226
EYS_chr6_63714980_65712226	0/0	a0012	3144	1	1	0	0	0	0	copy fasta	EYS	chr6	63714980	65712226
EYS_chr6_63714980_65712226	0/0	a0013	3144	1	1	0	0	0	0	copy fasta	EYS	chr6	63714980	65712226
EYS_chr6_63714980_65712226	0/0	a0014	3144	1	1	0	0	0	0	copy fasta	EYS	chr6	63714980	65712226
EYS_chr6_63714980_65712226	0/0	a0015	3144	1	1	0	0	0	0	copy fasta	EYS	chr6	63714980	65712226
EYS_chr6_63714980_65712226	0/0	a0016	3144	1	1	0	0	0	0	copy fasta	EYS	chr6	63714980	65712226
EYS_chr6_63714980_65712226	0/0	a0017	3144	1	1	0	0	0	0	copy fasta	EYS	chr6	63714980	65712226
EYS_chr6_63714980_65712226	0/0	a0018	3144	1	1	0	0	0	0	copy fasta	EYS	chr6	63714980	65712226
EYS_chr6_63714980_65712226	0/0	a0019	3144	1	1	0	0	0	0	copy fasta	EYS	chr6	63714980	65712226
EYS_chr6_63714980_65712226	0/0	a0020	3144	1	1	0	0	0	0	copy fasta	EYS	chr6	63714980	65712226
EYS_chr6_63714980_65712226	0/0	a0021	3144	1	0	1	0	0	0	copy fasta	EYS	chr6	63714980	65712226
EZH1_chr17_42695275_42750040	1/1	a0001	747	333	84	64	145	2	36	copy fasta	EZH1	chr17	42695275	42750040
EZH1_chr17_42695275_42750040	0/0	a0002	747	1	0	0	1	0	0	copy fasta	EZH1	chr17	42695275	42750040
EZH2_chr7_148802383_148889291	1/1	a0001	751	345	92	65	146	12	28	copy fasta	EZH2	chr7	148802383	148889291
EZH2_chr7_148802383_148889291	0/0	a0002	751	34	0	5	26	2	1	copy fasta	EZH2	chr7	148802383	148889291
EZH2_chr7_148802383_148889291	0/0	a0003	751	1	0	0	0	0	1	copy fasta	EZH2	chr7	148802383	148889291
EZHIP_chrX_51401948_51413843	1/1	a0001	503	284	72	51	125	11	23	copy fasta	EZHIP	chrX	51401948	51413843
EZHIP_chrX_51401948_51413843	0/0	a0002	503	4	4	0	0	0	0	copy fasta	EZHIP	chrX	51401948	51413843
EZHIP_chrX_51401948_51413843	0/0	a0003	503	2	0	0	2	0	0	copy fasta	EZHIP	chrX	51401948	51413843
EZHIP_chrX_51401948_51413843	0/0	a0004	503	1	0	0	0	0	1	copy fasta	EZHIP	chrX	51401948	51413843
EZHIP_chrX_51401948_51413843	0/0	a0005	503	1	1	0	0	0	0	copy fasta	EZHIP	chrX	51401948	51413843
EZHIP_chrX_51401948_51413843	0/0	a0006	503	1	0	1	0	0	0	copy fasta	EZHIP	chrX	51401948	51413843