JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
EZHIP_chrX_51401948_51413843	0/0	a0007	503	1	1	0	0	0	0	copy fasta	EZHIP	chrX	51401948	51413843
EZHIP_chrX_51401948_51413843	0/0	a0008	81	1	0	0	1	0	0	copy fasta	EZHIP	chrX	51401948	51413843
EZR_chr6_158760748_158824368	1/1	a0001	586	301	93	57	93	14	42	copy fasta	EZR	chr6	158760748	158824368
EZR_chr6_158760748_158824368	0/0	a0002	586	6	5	1	0	0	0	copy fasta	EZR	chr6	158760748	158824368
EZR_chr6_158760748_158824368	0/0	a0003	586	2	0	0	1	0	1	copy fasta	EZR	chr6	158760748	158824368
EZR_chr6_158760748_158824368	0/0	a0004	586	1	0	0	0	0	1	copy fasta	EZR	chr6	158760748	158824368
EZR_chr6_158760748_158824368	0/0	a0005	586	1	0	0	1	0	0	copy fasta	EZR	chr6	158760748	158824368
EZR_chr6_158760748_158824368	0/0	a0006	586	1	0	0	1	0	0	copy fasta	EZR	chr6	158760748	158824368
F10_chr13_113117799_113154529	1/1	a0001	488	392	75	79	182	18	36	copy fasta	F10	chr13	113117799	113154529
F10_chr13_113117799_113154529	0/0	a0002	488	13	11	2	0	0	0	copy fasta	F10	chr13	113117799	113154529
F10_chr13_113117799_113154529	0/0	a0003	488	3	3	0	0	0	0	copy fasta	F10	chr13	113117799	113154529
F10_chr13_113117799_113154529	0/0	a0004	488	1	0	0	1	0	0	copy fasta	F10	chr13	113117799	113154529
F10_chr13_113117799_113154529	0/0	a0005	488	1	1	0	0	0	0	copy fasta	F10	chr13	113117799	113154529
F10_chr13_113117799_113154529	0/0	a0006	488	1	0	1	0	0	0	copy fasta	F10	chr13	113117799	113154529
F10_chr13_113117799_113154529	0/0	a0007	488	1	0	0	1	0	0	copy fasta	F10	chr13	113117799	113154529
F11R_chr1_160990211_161026152	1/1	a0001	299	389	67	70	186	18	46	copy fasta	F11R	chr1	160990211	161026152
F11R_chr1_160990211_161026152	0/0	a0002	299	1	0	0	1	0	0	copy fasta	F11R	chr1	160990211	161026152
F11R_chr1_160990211_161026152	0/0	a0003	299	1	0	0	1	0	0	copy fasta	F11R	chr1	160990211	161026152
F11R_chr1_160990211_161026152	0/0	a0004	299	1	1	0	0	0	0	copy fasta	F11R	chr1	160990211	161026152
F11_chr4_186261189_186294681	1/1	a0001	625	443	92	83	203	18	45	copy fasta	F11	chr4	186261189	186294681
F11_chr4_186261189_186294681	0/0	a0002	625	4	3	1	0	0	0	copy fasta	F11	chr4	186261189	186294681
F11_chr4_186261189_186294681	0/0	a0003	625	2	2	0	0	0	0	copy fasta	F11	chr4	186261189	186294681
F11_chr4_186261189_186294681	0/0	a0004	625	1	1	0	0	0	0	copy fasta	F11	chr4	186261189	186294681
F11_chr4_186261189_186294681	0/0	a0005	625	1	0	1	0	0	0	copy fasta	F11	chr4	186261189	186294681
F11_chr4_186261189_186294681	0/0	a0006	625	1	0	1	0	0	0	copy fasta	F11	chr4	186261189	186294681
F11_chr4_186261189_186294681	0/0	a0007	625	1	0	0	1	0	0	copy fasta	F11	chr4	186261189	186294681
F11_chr4_186261189_186294681	0/0	a0008	625	1	0	0	1	0	0	copy fasta	F11	chr4	186261189	186294681
F11_chr4_186261189_186294681	0/0	a0009	625	1	0	0	0	0	1	copy fasta	F11	chr4	186261189	186294681
F11_chr4_186261189_186294681	0/0	a0010	625	1	0	0	1	0	0	copy fasta	F11	chr4	186261189	186294681
F12_chr5_177397141_177414564	0/1	a0001	615	404	87	72	179	16	49	copy fasta	F12	chr5	177397141	177414564
F12_chr5_177397141_177414564	1/0	a0002	615	31	3	8	18	0	1	copy fasta	F12	chr5	177397141	177414564
F12_chr5_177397141_177414564	0/0	a0003	615	10	0	0	10	0	0	copy fasta	F12	chr5	177397141	177414564
F12_chr5_177397141_177414564	0/0	a0004	615	5	5	0	0	0	0	copy fasta	F12	chr5	177397141	177414564
F12_chr5_177397141_177414564	0/0	a0005	615	1	0	1	0	0	0	copy fasta	F12	chr5	177397141	177414564
F12_chr5_177397141_177414564	0/0	a0006	615	1	0	0	1	0	0	copy fasta	F12	chr5	177397141	177414564
F12_chr5_177397141_177414564	0/0	a0007	615	1	1	0	0	0	0	copy fasta	F12	chr5	177397141	177414564
F12_chr5_177397141_177414564	0/0	a0008	615	1	0	1	0	0	0	copy fasta	F12	chr5	177397141	177414564
F13A1_chr6_6139084_6325662	1/0	a0001	732	148	34	34	64	2	13	copy fasta	F13A1	chr6	6139084	6325662
F13A1_chr6_6139084_6325662	0/0	a0002	732	49	9	5	26	1	8	copy fasta	F13A1	chr6	6139084	6325662
F13A1_chr6_6139084_6325662	0/1	a0003	732	35	14	15	0	3	2	copy fasta	F13A1	chr6	6139084	6325662
F13A1_chr6_6139084_6325662	0/0	a0004	732	21	12	6	0	1	2	copy fasta	F13A1	chr6	6139084	6325662
F13A1_chr6_6139084_6325662	0/0	a0005	732	12	2	1	9	0	0	copy fasta	F13A1	chr6	6139084	6325662
F13A1_chr6_6139084_6325662	0/0	a0006	732	5	3	2	0	0	0	copy fasta	F13A1	chr6	6139084	6325662
F13A1_chr6_6139084_6325662	0/0	a0007	732	5	0	0	3	0	2	copy fasta	F13A1	chr6	6139084	6325662
F13A1_chr6_6139084_6325662	0/0	a0008	732	4	0	1	0	1	2	copy fasta	F13A1	chr6	6139084	6325662
F13A1_chr6_6139084_6325662	0/0	a0009	732	4	0	3	0	0	1	copy fasta	F13A1	chr6	6139084	6325662
F13A1_chr6_6139084_6325662	0/0	a0010	732	3	0	0	3	0	0	copy fasta	F13A1	chr6	6139084	6325662
F13A1_chr6_6139084_6325662	0/0	a0011	732	2	1	1	0	0	0	copy fasta	F13A1	chr6	6139084	6325662
F13A1_chr6_6139084_6325662	0/0	a0012	732	1	1	0	0	0	0	copy fasta	F13A1	chr6	6139084	6325662
F13A1_chr6_6139084_6325662	0/0	a0013	732	1	0	1	0	0	0	copy fasta	F13A1	chr6	6139084	6325662